Géraldine Jean
Géraldine Jean
Associate Professor, Université of Nantes, LINA
Verified email at univ-nantes.fr
TitleCited byYear
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
5562011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
4312013
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ...
Nature methods 10 (12), 1185-1191, 2013
3902013
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
Elife 4, e05255, 2015
2162015
Comparative genomics of protoploid Saccharomycetaceae
JL Souciet, B Dujon, C Gaillardin, M Johnston, PV Baret, P Cliften, ...
Genome research 19 (10), 1696-1709, 2009
1952009
RNA‐Seq Read Alignments with PALMapper
G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch
Current protocols in bioinformatics, 11.6. 1-11.6. 37, 2010
752010
Genome rearrangements: a correct algorithm for optimal capping
G Jean, M Nikolski
Information Processing Letters 104 (1), 14-20, 2007
332007
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
D Mandakovic, C Rojas, J Maldonado, M Latorre, D Travisany, E Delage, ...
Scientific reports 8 (1), 5875, 2018
192018
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics, btt731, 2014
122014
Mining the semantics of genome super-blocks to infer ancestral architectures
G Jean, DJ Sherman, M Nikolski
Journal of Computational Biology 16 (9), 1267-1284, 2009
112009
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes
G Fertin, G Jean, E Tannier
Algorithms for Molecular Biology 12 (1), 16, 2017
82017
Algorithmic aspects of the maximum colorful arborescence problem
G Fertin, J Fradin, G Jean
International Conference on Theory and Applications of Models of Computation …, 2017
72017
Hybrid de novo tandem repeat detection using short and long reads
G Fertin, G Jean, A Radulescu, I Rusu
BMC medical genomics 8 (Suppl 3), S5, 2015
72015
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC Bioinformatics 12 (Suppl 11), A7, 2011
62011
Prefix and suffix reversals on strings
G Fertin, L Jankowiak, G Jean
Discrete Applied Mathematics 246, 140-153, 2018
52018
Prefix and Suffix Reversals on Strings
G Fertin, L Jankowiak, G Jean
String Processing and Information Retrieval, 165-176, 2015
52015
SyDiG: Uncovering synteny in distant genomes
G Jean, M Nikolski
International Journal of Bioinformatics Research and Applications 7 (1), 43-62, 2011
42011
Super Short Reversals on Both Gene Order and Intergenic Sizes
AR Oliveira, G Jean, G Fertin, U Dias, Z Dias
Brazilian Symposium on Bioinformatics, 14-25, 2018
22018
Genome rearrangements on both gene order and intergenic regions
G Fertin, G Jean, E Tannier
International Workshop on Algorithms in Bioinformatics, 162-173, 2016
22016
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph
G Fertin, G Jean, A Radulescu, I Rusu
Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on …, 2014
22014
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Articles 1–20