Géraldine Jean
Géraldine Jean
Associate Professor, Université of Nantes, LS2N
Verified email at univ-nantes.fr
Cited by
Cited by
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ...
Nature 477 (7365), 419-423, 2011
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ...
Nature methods 10 (12), 1177-1184, 2013
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, T Alioto, J Behr, ...
Nature methods 10 (12), 1185-1191, 2013
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ...
elife 4, e05255, 2015
Comparative genomics of protoploid Saccharomycetaceae
JL Souciet, B Dujon, C Gaillardin, M Johnston, PV Baret, P Cliften, ...
Genome research 19 (10), 1696-1709, 2009
RNA‐Seq read alignments with PALMapper
G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch
Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
D Mandakovic, C Rojas, J Maldonado, M Latorre, D Travisany, E Delage, ...
Scientific reports 8 (1), 5875, 2018
Genome rearrangements: a correct algorithm for optimal capping
G Jean, M Nikolski
Information Processing Letters 104 (1), 14-20, 2007
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes
G Fertin, G Jean, E Tannier
Algorithms for Molecular Biology 12 (1), 16, 2017
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
VT Sreedharan, SJ Schultheiss, G Jean, A Kahles, R Bohnert, P Drewe, ...
Bioinformatics 30 (9), 1300-1301, 2014
Mining the semantics of genome super-blocks to infer ancestral architectures
G Jean, DJ Sherman, M Nikolski
Journal of Computational Biology 16 (9), 1267-1284, 2009
Hybrid de novo tandem repeat detection using short and long reads
G Fertin, G Jean, A Radulescu, I Rusu
BMC medical genomics 8 (Suppl 3), S5, 2015
Sorting by genome rearrangements on both gene order and intergenic sizes
KL Brito, G Jean, G Fertin, AR Oliveira, U Dias, Z Dias
Journal of Computational Biology 27 (2), 156-174, 2020
Algorithmic aspects of the maximum colorful arborescence problem
G Fertin, J Fradin, G Jean
International Conference on Theory and Applications of Models of Computation …, 2017
Prefix and Suffix Reversals on Strings
G Fertin, L Jankowiak, G Jean
String Processing and Information Retrieval, 165-176, 2015
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions
AR Oliveira, G Jean, G Fertin, KL Brito, U Dias, Z Dias
International Conference on Algorithms for Computational Biology, 16-28, 2020
Super Short Reversals on Both Gene Order and Intergenic Sizes
AR Oliveira, G Jean, G Fertin, U Dias, Z Dias
Brazilian Symposium on Bioinformatics, 14-25, 2018
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data
SJ Schultheiss, G Jean, J Behr, R Bohnert, P Drewe, N Görnitz, A Kahles, ...
BMC bioinformatics 12 (11), A7, 2011
Sorting Signed Permutations by Intergenic Reversals.
AR Oliveira, G Jean, G Fertin, KL Brito, L Bulteau, U Dias, Z Dias
IEEE/ACM transactions on computational biology and bioinformatics, 2020
Super short operations on both gene order and intergenic sizes
AR Oliveira, G Jean, G Fertin, U Dias, Z Dias
Algorithms for Molecular Biology 14 (1), 1-17, 2019
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