| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1586 | 2018 |
| The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community M Jain, HE Olsen, B Paten, M Akeson Genome biology 17, 1-11, 2016 | 1251 | 2016 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 787 | 2022 |
| Improved data analysis for the MinION nanopore sequencer M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten, M Akeson Nature methods 12 (4), 351-356, 2015 | 707 | 2015 |
| Nanopore native RNA sequencing of a human poly (A) transcriptome (vol 16, pg, 1297, 2019) RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... NATURE METHODS 17 (1), 114-114, 2020 | 396* | 2020 |
| Mapping DNA methylation with high-throughput nanopore sequencing AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ... Nature methods 14 (4), 411-413, 2017 | 372 | 2017 |
| Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells A Byrne, AE Beaudin, HE Olsen, M Jain, C Cole, T Palmer, RM DuBois, ... Nature communications 8 (1), 16027, 2017 | 328 | 2017 |
| Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ... Nature biotechnology 38 (9), 1044-1053, 2020 | 306* | 2020 |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ... F1000Research 4 (1075), 2015 | 290 | 2015 |
| Cancer vaccines and carbohydrate epitopes J Heimburg-Molinaro, M Lum, G Vijay, M Jain, A Almogren, ... Vaccine 29 (48), 8802-8826, 2011 | 271 | 2011 |
| Linear assembly of a human centromere on the Y chromosome M Jain, HE Olsen, DJ Turner, D Stoddart, KV Bulazel, B Paten, D Haussler, ... Nature biotechnology 36 (4), 321, 2018 | 226 | 2018 |
| Centromere reference models for human chromosomes X and Y satellite arrays KH Miga, Y Newton, M Jain, N Altemose, HF Willard, WJ Kent Genome research 24 (4), 697-707, 2014 | 216 | 2014 |
| MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome JR Tyson, NJ O'Neil, M Jain, HE Olsen, P Hieter, TP Snutch Genome research 28 (2), 266-274, 2018 | 167* | 2018 |
| Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing AM Smith, M Jain, L Mulroney, DR Garalde, M Akeson PloS one 14 (5), e0216709, 2019 | 124 | 2019 |
| MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9. 0 chemistry M Jain, JR Tyson, M Loose, CLC Ip, DA Eccles, J O'Grady, S Malla, ... F1000Research 6, 2017 | 121 | 2017 |
| Ultrarapid nanopore genome sequencing in a critical care setting JE Gorzynski, SD Goenka, K Shafin, TD Jensen, DG Fisk, ME Grove, ... New England Journal of Medicine 386 (7), 700-702, 2022 | 79 | 2022 |
| Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021 | 73 | 2021 |
| Epigenetic patterns in a complete human genome A Gershman, MEG Sauria, X Guitart, MR Vollger, PW Hook, SJ Hoyt, ... Science 376 (6588), eabj5089, 2022 | 72 | 2022 |
| CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma SJ Liu, M Malatesta, BV Lien, P Saha, SS Thombare, SJ Hong, L Pedraza, ... Genome biology 21 (1), 1-18, 2020 | 68 | 2020 |
| PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ... Cell Genomics 2 (5), 100129, 2022 | 60 | 2022 |
Mark AkesonProfessor of Biomolecular Engineering, UC Santa CruzVerified email at soe.ucsc.edu
