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Jae Young Choi
Jae Young Choi
Assistant Professor, Dept. of Ecology and Evolutionary Biology, University of Kansas
Verified email at ku.edu - Homepage
Title
Cited by
Cited by
Year
The rice paradox: Multiple origins but single domestication in Asian rice
JY Choi, AE Platts, DQ Fuller, YI Hsing, RA Wing, MD Purugganan
Molecular biology and evolution 34 (4), 969-979, 2017
2372017
Genomic history and ecology of the geographic spread of rice
RM Gutaker, SC Groen, ES Bellis, JY Choi, IS Pires, RK Bocinsky, ...
Nature Plants 6 (5), 492-502, 2020
1702020
Domestication history and geographical adaptation inferred from a SNP map of African rice
RS Meyer, JY Choi, M Sanches, A Plessis, JM Flowers, J Amas, K Dorph, ...
Nature genetics 48 (9), 1083-1088, 2016
1682016
The strength and pattern of natural selection on gene expression in rice
SC Groen, I Ćalić, Z Joly-Lopez, AE Platts, JY Choi, M Natividad, K Dorph, ...
Nature 578 (7796), 572-576, 2020
962020
Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae
AD Cutter, JY Choi
Genome research 20 (8), 1103-1111, 2010
912010
Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
JY Choi, ZN Lye, SC Groen, X Dai, P Rughani, S Zaaijer, ED Harrington, ...
Genome Biology 21 (1), 21, 2020
902020
Double-edged sword: The evolutionary consequences of the epigenetic silencing of transposable elements
JY Choi, YCG Lee
PLoS genetics 16 (7), e1008872, 2020
852020
The bracteatus pineapple genome and domestication of clonally propagated crops
LY Chen, R VanBuren, M Paris, H Zhou, X Zhang, CM Wai, H Yan, ...
Nature Genetics 51 (10), 1549-1558, 2019
802019
Multiple Origin but Single Domestication Led to Oryza sativa
JY Choi, MD Purugganan
G3: Genes, Genomes, Genetics 8 (3), 797-803, 2018
702018
Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars
D Shin, S Lee, TH Kim, JH Lee, J Park, J Lee, JY Lee, LH Cho, JY Choi, ...
Nature Communications 11 (1), 1-11, 2020
652020
Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice
JY Choi, MD Purugganan
Molecular biology and evolution 35 (2), 365-382, 2018
522018
Population genomics of infectious and integrated Wolbachia pipientis genomes in Drosophila ananassae
JY Choi, JE Bubnell, CF Aquadro
Genome biology and evolution 7 (8), 2362-2382, 2015
402015
Signatures of selection underpinning rapid coral adaptation to the world’s warmest reefs
EG Smith, KM Hazzouri, JY Choi, P Delaney, M Al-Kharafi, EJ Howells, ...
Science Advances 8 (2), eabl7287, 2022
392022
The complex geography of domestication of the African rice Oryza glaberrima
JY Choi, M Zaidem, R Gutaker, K Dorph, RK Singh, MD Purugganan
PLoS genetics 15 (3), e1007414, 2019
392019
Natural variation in plant telomere length is associated with flowering time
JY Choi, LR Abdulkina, J Yin, IB Chastukhina, JT Lovell, IA Agabekian, ...
The Plant Cell 33 (4), 1118-1134, 2021
322021
Divergent selection and primary gene flow shape incipient speciation of a riparian tree on Hawaii Island
JY Choi, M Purugganan, EA Stacy
Molecular biology and evolution 37 (3), 695-710, 2020
292020
The Coevolutionary Period of Wolbachia pipientis Infecting Drosophila ananassae and Its Impact on the Evolution of the Host Germline Stem Cell Regulating Genes
JY Choi, CF Aquadro
Molecular biology and evolution 31 (9), 2457-2471, 2014
292014
Evolutionary rate covariation analysis of E-cadherin identifies Raskol as a regulator of cell adhesion and actin dynamics in Drosophila
Q Raza, JY Choi, Y Li, RM O’Dowd, SC Watkins, M Chikina, Y Hong, ...
PloS Genetics, 2019
262019
Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands
JY Choi, X Dai, O Alam, JZ Peng, P Rughani, S Hickey, E Harrington, ...
Proceedings of the National Academy of Sciences 118 (37), e2023801118, 2021
232021
An inferred fitness consequence map of the rice genome
Z Joly-Lopez, AE Platts, B Gulko, JY Choi, SC Groen, X Zhong, A Siepel, ...
Nature Plants 6 (2), 119-130, 2020
222020
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