| Topological domains in mammalian genomes identified by analysis of chromatin interactions JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren Nature 485 (7398), 376-380, 2012 | 6811 | 2012 |
| Chromatin architecture reorganization during stem cell differentiation JR Dixon, I Jung, S Selvaraj, Y Shen, JE Antosiewicz-Bourget, AY Lee, ... Nature 518 (7539), 331-336, 2015 | 1676 | 2015 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1356 | 2021 |
| A high-resolution map of the three-dimensional chromatin interactome in human cells F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen, AD Schmitt, ... Nature 503 (7475), 290-294, 2013 | 1287 | 2013 |
| Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020 | 679 | 2020 |
| Human body epigenome maps reveal noncanonical DNA methylation variation MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ... Nature 523 (7559), 212-216, 2015 | 645 | 2015 |
| Integrating Hi-C links with assembly graphs for chromosome-scale assembly J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ... PLoS computational biology 15 (8), e1007273, 2019 | 643 | 2019 |
| Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing S Selvaraj, JR Dixon, V Bansal, B Ren Nature biotechnology 31 (12), 1111-1118, 2013 | 338 | 2013 |
| 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation GC Hon, CX Song, T Du, F Jin, S Selvaraj, AY Lee, C Yen, Z Ye, SQ Mao, ... Molecular cell 56 (2), 286-297, 2014 | 335 | 2014 |
| HiCNorm: removing biases in Hi-C data via Poisson regression M Hu, K Deng, S Selvaraj, Z Qin, B Ren, JS Liu Bioinformatics 28 (23), 3131-3133, 2012 | 285 | 2012 |
| Integrative analysis of haplotype-resolved epigenomes across human tissues D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ... Nature 518 (7539), 350-354, 2015 | 250 | 2015 |
| Bayesian inference of spatial organizations of chromosomes M Hu, K Deng, Z Qin, J Dixon, S Selvaraj, J Fang, B Ren, JS Liu PLoS computational biology 9 (1), e1002893, 2013 | 247 | 2013 |
| CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells Y Li, CM Rivera, H Ishii, F Jin, S Selvaraj, AY Lee, JR Dixon, B Ren PloS one 9 (12), e114485, 2014 | 197 | 2014 |
| Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression WW Greenwald, H Li, P Benaglio, D Jakubosky, H Matsui, A Schmitt, ... Nature communications 10 (1), 1054, 2019 | 119 | 2019 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 100 | 2022 |
| Accurate molecular deconvolution of mixture samples S Selvaraj, N Heintzman, CE Laing US Patent App. 15/738,871, 2018 | 29 | 2018 |
| Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq S Selvaraj, AD Schmitt, JR Dixon, B Ren BMC genomics 16, 1-7, 2015 | 21 | 2015 |
| Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ... Nature 530 (7589), 242-242, 2016 | 17 | 2016 |
| Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin Y Liu, TY Liu, DE Weinberg, BW White, CJ De La Torre, CL Tan, ... BioRxiv, 564773, 2019 | 12 | 2019 |
| The association of self-blame with treatment preferences in a multi-country cohort of advanced cancer patients from the APPROACH study B Doble, E Lau, C Malhotra, S Ozdemir, I Teo, EA Finkelstein, ... Journal of Psychosomatic Research 139, 110284, 2020 | 8 | 2020 |
Bing Ren, Ph.D.University of California, San DiegoVerified email at ucsd.edu
