Fiona Brinkman
TitleCited byYear
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
CK Stover, XQ Pham, AL Erwin, SD Mizoguchi, P Warrener, MJ Hickey, ...
Nature 406 (6799), 959, 2000
42752000
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ...
Bioinformatics 26 (13), 1608-1615, 2010
13202010
The genome sequence of taurine cattle: a window to ruminant biology and evolution
CG Elsik, RL Tellam, KC Worley
Science 324 (5926), 522-528, 2009
8232009
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
JL Gardy, MR Laird, F Chen, S Rey, CJ Walsh, M Ester, FSL Brinkman
Bioinformatics 21 (5), 617-623, 2004
7952004
Whole-genome sequencing and social-network analysis of a tuberculosis outbreak
JL Gardy, JC Johnston, SJH Sui, VJ Cook, L Shah, E Brodkin, S Rempel, ...
New England Journal of Medicine 364 (8), 730-739, 2011
6422011
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
MP McLeod, RL Warren, WWL Hsiao, N Araki, M Myhre, C Fernandes, ...
Proceedings of the National Academy of Sciences 103 (42), 15582-15587, 2006
6162006
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
GL Winsor, DKW Lam, L Fleming, R Lo, MD Whiteside, NY Yu, ...
Nucleic acids research 39 (suppl_1), D596-D600, 2010
5912010
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
5802016
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
N Mookherjee, KL Brown, DME Bowdish, S Doria, R Falsafi, K Hokamp, ...
The Journal of Immunology 176 (4), 2455-2464, 2006
5032006
PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria
JL Gardy, C Spencer, K Wang, M Ester, GE Tusnady, I Simon, S Hua, ...
Nucleic acids research 31 (13), 3613-3617, 2003
4542003
InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
K Breuer, AK Foroushani, MR Laird, C Chen, A Sribnaia, R Lo, GL Winsor, ...
Nucleic acids research 41 (D1), D1228-D1233, 2012
4352012
IslandViewer: an integrated interface for computational identification and visualization of genomic islands
MGI Langille, FSL Brinkman
Bioinformatics 25 (5), 664-665, 2009
3832009
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 2008
3292008
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
GL Winsor, EJ Griffiths, R Lo, BK Dhillon, JA Shay, FSL Brinkman
Nucleic acids research 44 (D1), D646-D653, 2015
3282015
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
S Orchard, S Kerrien, S Abbani, B Aranda, J Bhate, S Bidwell, A Bridge, ...
Nature methods 9 (4), 345, 2012
3112012
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa
C Winstanley, MGI Langille, JL Fothergill, I Kukavica-Ibrulj, ...
Genome research 19 (1), 12-23, 2009
3062009
Function of Pseudomonas Porins in Uptake and Efflux
REW Hancock, FSL Brinkman
Annual Reviews in Microbiology 56 (1), 17-38, 2002
3042002
The genome sequence of taurine cattle: a window to ruminant biology and evolution
TBG Sequencing, CG Elsik, RL Tellam, KC Worley, Analysis Consortium
Science (New York, NY) 324 (5926), 522, 2009
2922009
IslandPath: aiding detection of genomic islands in prokaryotes
W Hsiao, I Wan, SJ Jones, FSL Brinkman
Bioinformatics 19 (3), 418-420, 2003
2582003
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
BK Dhillon, MR Laird, JA Shay, GL Winsor, R Lo, F Nizam, SK Pereira, ...
Nucleic acids research 43 (W1), W104-W108, 2015
2572015
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Articles 1–20