Jens Reeder
Jens Reeder
Verified email at gene.com
Title
Cited by
Cited by
Year
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335-336, 2010
216462010
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222-227, 2012
47712012
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
J Reeder, R Knight
Nature methods 7 (9), 668-669, 2010
7162010
Defining seasonal marine microbial community dynamics
JA Gilbert, JA Steele, JG Caporaso, L Steinbrück, J Reeder, B Temperton, ...
The ISME journal 6 (2), 298-308, 2012
7152012
A comprehensive transcriptional portrait of human cancer cell lines
C Klijn, S Durinck, EW Stawiski, PM Haverty, Z Jiang, H Liu, J Degenhardt, ...
Nature biotechnology 33 (3), 306-312, 2015
3902015
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
J Reeder, R Giegerich
BMC bioinformatics 5 (1), 104, 2004
3452004
RNAshapes: an integrated RNA analysis package based on abstract shapes
P Steffen, B Voß, M Rehmsmeier, J Reeder, R Giegerich
Bioinformatics 22 (4), 500-503, 2006
3242006
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake
C Manichanh, J Reeder, P Gibert, E Varela, M Llopis, M Antolin, R Guigo, ...
Genome research 20 (10), 1411-1419, 2010
2862010
The'rare biosphere': a reality check
J Reeder, R Knight
Nature methods 6 (9), 636-637, 2009
2522009
Spectrum of diverse genomic alterations define non–clear cell renal carcinoma subtypes
S Durinck, EW Stawiski, A Pavía-Jiménez, Z Modrusan, P Kapur, ...
Nature genetics 47 (1), 13, 2015
2212015
GMAP and GSNAP for genomic sequence alignment: enhancements to speed, accuracy, and functionality
TD Wu, J Reeder, M Lawrence, G Becker, MJ Brauer
Statistical genomics, 283-334, 2016
1772016
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
J Reeder, P Steffen, R Giegerich
Nucleic acids research 35 (suppl_2), W320-W324, 2007
1392007
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction
J Reeder, R Giegerich
Bioinformatics 21 (17), 3516-3523, 2005
1192005
Beyond Mfold: recent advances in RNA bioinformatics
J Reeder, M Höchsmann, M Rehmsmeier, B Voss, R Giegerich
Journal of biotechnology 124 (1), 41-55, 2006
802006
Recurrent Loss of NFE2L2 Exon 2 Is a Mechanism for Nrf2 Pathway Activation in Human Cancers
LD Goldstein, J Lee, F Gnad, C Klijn, A Schaub, J Reeder, A Daemen, ...
Cell reports 16 (10), 2605-2617, 2016
792016
Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer
J Liu, M McCleland, EW Stawiski, F Gnad, O Mayba, PM Haverty, ...
Nature communications 5 (1), 1-8, 2014
722014
KnotInFrame: prediction of− 1 ribosomal frameshift events
C Theis, J Reeder, R Giegerich
Nucleic acids research 36 (18), 6013-6020, 2008
622008
Locomotif: from graphical motif description to RNA motif search
J Reeder, J Reeder, R Giegerich
Bioinformatics 23 (13), i392-i400, 2007
542007
Analysis of protein-altering variants in telomerase genes and their association with MUC5B common variant status in patients with idiopathic pulmonary fibrosis: a candidate …
A Dressen, AR Abbas, C Cabanski, J Reeder, TR Ramalingam, ...
The Lancet Respiratory Medicine 6 (8), 603-614, 2018
492018
Shape based indexing for faster search of RNA family databases
S Janssen, J Reeder, R Giegerich
BMC bioinformatics 9 (1), 131, 2008
412008
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Articles 1–20