| The origin, evolution and structure of the protein world G Caetano-Anollés, M Wang, D Caetano-Anollés, JE Mittenthal Biochemical Journal 417 (3), 621-637, 2009 | 208 | 2009 |
| An evolutionarily structured universe of protein architecture G Caetano-Anollés, D Caetano-Anollés Genome research 13 (7), 1563-1571, 2003 | 167 | 2003 |
| The origin and evolution of modern metabolism G Caetano-Anollés, LS Yafremava, H Gee, D Caetano-Anollés, HS Kim, ... The international journal of biochemistry & cell biology 41 (2), 285-297, 2009 | 145 | 2009 |
| Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world M Wang, LS Yafremava, D Caetano-Anollés, JE Mittenthal, ... Genome Research 17 (11), 1572-1585, 2007 | 140 | 2007 |
| Neuromolecular responses to social challenge: Common mechanisms across mouse, stickleback fish, and honey bee CC Rittschof, SA Bukhari, LG Sloofman, JM Troy, D Caetano-Anollés, ... Proceedings of the national Academy of Sciences 111 (50), 17929-17934, 2014 | 122 | 2014 |
| The phylogenomic roots of modern biochemistry: origins of proteins, cofactors and protein biosynthesis G Caetano-Anollés, KM Kim, D Caetano-Anollés Journal of Molecular Evolution 74 (1-2), 1-34, 2012 | 65 | 2012 |
| Proteome evolution and the metabolic origins of translation and cellular life D Caetano-Anollés, KM Kim, JE Mittenthal, G Caetano-Anollés Journal of molecular evolution 72 (1), 14-33, 2011 | 56 | 2011 |
| Gain, loss and divergence in primate zinc-finger genes: a rich resource for evolution of gene regulatory differences between species K Nowick, C Fields, T Gernat, D Caetano-Anolles, N Kholina, L Stubbs PLoS One 6 (6), e21553, 2011 | 52 | 2011 |
| Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility G Caetano-Anollés, M Wang, D Caetano-Anollés PLoS One 8 (8), e72225, 2013 | 49 | 2013 |
| Protein domain structure uncovers the origin of aerobic metabolism and the rise of planetary oxygen KM Kim, T Qin, YY Jiang, LL Chen, M Xiong, D Caetano-Anollés, ... Structure 20 (1), 67-76, 2012 | 48 | 2012 |
| Universal sharing patterns in proteomes and evolution of protein fold architecture and life G Caetano-Anolles, D Caetano-Anolles Journal of molecular evolution 60 (4), 484-498, 2005 | 45 | 2005 |
| Function and evolution of C2H2 zinc finger arrays L Stubbs, Y Sun, D Caetano-Anolles A handbook of transcription factors, 75-94, 2011 | 40 | 2011 |
| Piecemeal buildup of the genetic code, ribosomes, and genomes from primordial tRNA building blocks D Caetano-Anollés, G Caetano-Anollés Life 6 (4), 43, 2016 | 36 | 2016 |
| Archaea: the first domain of diversified life G Caetano-Anollés, A Nasir, K Zhou, D Caetano-Anollés, JE Mittenthal, ... Archaea 2014, 2014 | 36 | 2014 |
| Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice MC Saul, CH Seward, JM Troy, H Zhang, LG Sloofman, X Lu, PA Weisner, ... Genome research 27 (6), 959-972, 2017 | 31 | 2017 |
| Computing the origin and evolution of the ribosome from its structure—Uncovering processes of macromolecular accretion benefiting synthetic biology G Caetano-Anollés, D Caetano-Anollés Computational and structural biotechnology journal 13, 427-447, 2015 | 28 | 2015 |
| Biphasic patterns of diversification and the emergence of modules JE Mittenthal, D Caetano-Anollés, G Caetano-Anollés Frontiers in genetics 3, 147, 2012 | 28 | 2012 |
| Origins and evolution of modern biochemistry: insights from genomes and molecular structure. G Caetano-Anolles, FJ Sun, M Wang, LS Yafremava, A Harish, HS Kim, ... Frontiers in Bioscience, 2008 | 19 | 2008 |
| Rooting phylogenies and the tree of life while minimizing ad hoc and auxiliary assumptions G Caetano-Anollés, A Nasir, KM Kim, D Caetano-Anollés Evolutionary Bioinformatics 14, 1176934318805101, 2018 | 12 | 2018 |
| Commentary: History of the ribosome and the origin of translation D Caetano-Anollés, G Caetano-Anollés Frontiers in molecular biosciences 3, 87, 2017 | 11 | 2017 |
