Benjamin J Ainscough
Title
Cited by
Cited by
Year
Convergent loss of PTEN leads to clinical resistance to a PI (3) Kα inhibitor
D Juric, P Castel, M Griffith, OL Griffith, HH Won, H Ellis, SH Ebbesen, ...
Nature 518 (7538), 240-244, 2015
3792015
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ...
Nature genetics 49 (2), 170-174, 2017
2812017
DGIdb 2.0: mining clinically relevant drug–gene interactions
AH Wagner, AC Coffman, BJ Ainscough, NC Spies, ZL Skidmore, ...
Nucleic acids research 44 (D1), D1036-D1044, 2016
2492016
High-performance web services for querying gene and variant annotation
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, GS Stupp, ...
Genome biology 17 (1), 1-7, 2016
1152016
Genome-wide association study of CSF levels of 59 Alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation
JSK Kauwe, MH Bailey, PG Ridge, R Perry, ME Wadsworth, KL Hoyt, ...
PLoS Genet 10 (10), e1004758, 2014
912014
Informatics for RNA sequencing: a web resource for analysis on the cloud
M Griffith, JR Walker, NC Spies, BJ Ainscough, OL Griffith
PLoS Comput Biol 11 (8), e1004393, 2015
842015
Genome modeling system: a knowledge management platform for genomics
M Griffith, OL Griffith, SM Smith, A Ramu, MB Callaway, AM Brummett, ...
PLoS computational biology 11 (7), e1004274, 2015
692015
Organizing knowledge to enable personalization of medicine in cancer
BM Good, BJ Ainscough, JF McMichael, AI Su, OL Griffith
Genome biology 15 (8), 1-9, 2014
692014
DoCM: a database of curated mutations in cancer
BJ Ainscough, M Griffith, AC Coffman, AH Wagner, J Kunisaki, ...
Nature methods 13 (10), 806-807, 2016
622016
Phosphorylated tau-Aβ42 ratio as a continuous trait for biomarker discovery for early-stage Alzheimer’s disease in multiplex immunoassay panels of cerebrospinal fluid
O Harari, C Cruchaga, JSK Kauwe, BJ Ainscough, K Bales, EH Pickering, ...
Biological psychiatry 75 (9), 723-731, 2014
622014
The prognostic effects of somatic mutations in ER-positive breast cancer
OL Griffith, NC Spies, M Anurag, M Griffith, J Luo, D Tu, B Yeo, J Kunisaki, ...
Nature communications 9 (1), 1-16, 2018
512018
Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples
EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, LM Sheta, ...
Genetics in Medicine 21 (4), 972-981, 2019
332019
Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia
M Griffith, OL Griffith, K Krysiak, ZL Skidmore, MJ Christopher, JM Klco, ...
Experimental hematology 44 (7), 603-613, 2016
262016
A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data
BJ Ainscough, EK Barnell, P Ronning, KM Campbell, AH Wagner, ...
Nature genetics 50 (12), 1735-1743, 2018
232018
Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae)
BJ Ainscough, JW Breinholt, HW Robison, KA Crandall
Zoologica Scripta 42 (3), 306-316, 2013
182013
CIViC: A knowledgebase for expert-crowdsourcing the clinical interpretation of variants in cancer
M Griffith, NC Spies, K Krysiak, AC Coffman, JF McMichael, BJ Ainscough, ...
BioRxiv, 072892, 2016
72016
Standard operating procedure for somatic variant refinement of tumor sequencing data
EK Barnell, P Ronning, KM Campbell, K Krysiak, BJ Ainscough, ...
BioRxiv, 266262, 2018
42018
MyGene. info and MyVariant. info: gene and variant annotation query services
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, GS Stupp, ...
bioRxiv, 035667, 2015
32015
26. Community engagement for crowd-sourcing clinically relevant somatic variants, the CIViC experience.
K Krysiak, A Danos, A Wagner, J McMichael, A Coffman, S Kiwala, ...
Cancer Genetics 244, 10, 2020
2020
33. Aggregating evidence to determine the clinical significance of cancer variants in the CIViC knowledgebase
K Krysiak, A Danos, A Wagner, J McMichael, S Kiwala, A Coffman, ...
Cancer Genetics 233, S14, 2019
2019
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