Brian G. Pierce
Brian G. Pierce
Assistant Professor, Institute for Bioscience and Biotechnology Research, University of Maryland
Verified email at umd.edu - Homepage
TitleCited byYear
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
6072012
ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng
Bioinformatics 30 (12), 1771-1773, 2014
5342014
ZRANK: reranking protein docking predictions with an optimized energy function
B Pierce, Z Weng
PROTEINS: Structure, Function, and Bioinformatics 67 (4), 1078-1086, 2007
3532007
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library
BG Pierce, Y Hourai, Z Weng
PloS one 6 (9), e24657, 2011
3362011
Protein–protein docking benchmark 2.0: an update
J Mintseris, K Wiehe, B Pierce, R Anderson, R Chen, J Janin, Z Weng
Proteins: Structure, Function, and Bioinformatics 60 (2), 214-216, 2005
3232005
Integrating statistical pair potentials into protein complex prediction
J Mintseris, B Pierce, K Wiehe, R Anderson, R Chen, Z Weng
Proteins: Structure, Function, and Bioinformatics 69 (3), 511-520, 2007
2602007
Protein–protein docking benchmark version 3.0
H Hwang, B Pierce, J Mintseris, J Janin, Z Weng
Proteins: Structure, Function, and Bioinformatics 73 (3), 705-709, 2008
2522008
Factorbook. org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
J Wang, J Zhuang, S Iyer, XY Lin, MC Greven, BH Kim, J Moore, ...
Nucleic acids research 41 (D1), D171-D176, 2012
1932012
M-ZDOCK: a grid-based approach for Cn symmetric multimer docking
B Pierce, W Tong, Z Weng
Bioinformatics 21 (8), 1472-1478, 2005
1502005
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
1292015
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1232011
A combination of rescoring and refinement significantly improves protein docking performance
B Pierce, Z Weng
Proteins: Structure, Function, and Bioinformatics 72 (1), 270-279, 2008
1122008
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5
K Wiehe, B Pierce, J Mintseris, WW Tong, R Anderson, R Chen, Z Weng
Proteins: Structure, Function, and Bioinformatics 60 (2), 207-213, 2005
1122005
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
872013
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
792016
Structure‐based design of a T‐cell receptor leads to nearly 100‐fold improvement in binding affinity for pepMHC
JN Haidar, B Pierce, Y Yu, W Tong, M Li, Z Weng
Proteins: Structure, Function, and Bioinformatics 74 (4), 948-960, 2009
732009
The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI
K Wiehe, B Pierce, WW Tong, H Hwang, J Mintseris, Z Weng
Proteins: Structure, Function, and Bioinformatics 69 (4), 719-725, 2007
722007
Performance of ZDOCK and ZRANK in CAPRI rounds 13–19
H Hwang, T Vreven, BG Pierce, JH Hung, Z Weng
Proteins: Structure, Function, and Bioinformatics 78 (15), 3104-3110, 2010
702010
Cutting edge: evidence for a dynamically driven T cell signaling mechanism
WF Hawse, MM Champion, MV Joyce, LM Hellman, M Hossain, V Ryan, ...
The Journal of Immunology 188 (12), 5819-5823, 2012
642012
Prediction of protein–protein binding free energies
T Vreven, H Hwang, BG Pierce, Z Weng
Protein Science 21 (3), 396-404, 2012
612012
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