Erik Clarke
Erik Clarke
Postdoctoral Researcher at the University of Pennsylvania
Verified email at pennmedicine.upenn.edu
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
3812018
Optimizing methods and dodging pitfalls in microbiome research
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ...
Microbiome 5 (1), 1-14, 2017
2842017
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries
JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ...
Microbiome 6 (1), 1-11, 2018
1212018
The Gene Wiki in 2011: community intelligence applied to human gene annotation
BM Good, EL Clarke, L de Alfaro, AI Su
Nucleic acids research 40 (D1), D1255-D1261, 2012
422012
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
EL Clarke, LJ Taylor, C Zhao, A Connell, JJ Lee, B Fett, FD Bushman, ...
Microbiome 7 (1), 1-13, 2019
392019
Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low–Microbial Content Samples
EL Clarke, AP Lauder, CE Hofstaedter, Y Hwang, AS Fitzgerald, I Imai, ...
American journal of respiratory and critical care medicine 197 (2), 225-234, 2018
332018
A task-based approach for Gene Ontology evaluation
EL Clarke, S Loguercio, BM Good, AI Su
Journal of biomedical semantics 4 (1), 1-11, 2013
322013
Ggbeeswarm: Categorical scatter (violin point) plots
E Clarke, S Sherrill-Mix
R package version 0.6. 0. Retrieved from https://CRAN. R-project. org, 2017
312017
Modeling altered T-cell development with induced pluripotent stem cells from patients with RAG1-dependent immune deficiencies
PM Brauer, IM Pessach, E Clarke, JH Rowe, L Ott de Bruin, YN Lee, ...
Blood, The Journal of the American Society of Hematology 128 (6), 783-793, 2016
25*2016
Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit
VR Knecht, JE McGinniss, HM Shankar, EL Clarke, BJ Kelly, I Imai, ...
Infection Control & Hospital Epidemiology 40 (2), 171-177, 2019
212019
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency
EL Clarke, AJ Connell, E Six, NA Kadry, AA Abbas, Y Hwang, JK Everett, ...
Genome medicine 10 (1), 1-14, 2018
162018
Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation
AA Abbas, JC Young, EL Clarke, JM Diamond, I Imai, AR Haas, E Cantu, ...
American Journal of Transplantation 19 (4), 1086-1097, 2019
132019
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. Microbiome 6: 196
JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ...
132018
swga: a primer design toolkit for selective whole genome amplification
EL Clarke, SA Sundararaman, SN Seifert, FD Bushman, BH Hahn, ...
Bioinformatics 33 (14), 2071-2077, 2017
122017
ggbeeswarm: categorical scatter (violin point) plots. R package version 0.6. 0
E Clarke, S Sherrill-Mix
R Foundation, 2017
122017
Linking genes to diseases with a SNPedia-Gene Wiki mashup
BM Good, EL Clarke, S Loguercio, AI Su
Journal of biomedical semantics 3 (1), 1-10, 2012
122012
Sherrill-Mix S. ggbeeswarm: Categorical Scatter (Violin Point) Plots. 2017
E Clarke
R package, 0
11
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links
BM Good, EL Clarke, S Loguercio, AI Su
Database, 2012
102012
Optimizing methods and dodging pitfalls in microbiome research. Microbiome
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, K Bittinger
BioMed Central 5, 52, 2017
62017
Upper respiratory dysbiosis with a facultative-dominated ecotype in advanced lung disease and dynamic change after lung transplant
A Simon-Soro, MB Sohn, JE McGinniss, I Imai, MC Brown, VR Knecht, ...
Annals of the American Thoracic Society 16 (11), 1383-1391, 2019
52019
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