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Gaia Ceddia
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Title
Cited by
Cited by
Year
Matrix factorization-based technique for drug repurposing predictions
G Ceddia, P Pinoli, S Ceri, M Masseroli
IEEE journal of biomedical and health informatics 24 (11), 3162-3172, 2020
342020
Association rule mining to identify transcription factor interactions in genomic regions
G Ceddia, LN Martino, A Parodi, P Secchi, S Campaner, M Masseroli
Bioinformatics 36 (4), 1007-1013, 2020
182020
Drug repositioning predictions by non-negative matrix tri-factorization of integrated association data
G Dissez, G Ceddia, P Pinoli, S Ceri, M Masseroli
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
122019
Computational analysis of fused co-expression networks for the identification of candidate cancer gene biomarkers
S Pidò, G Ceddia, M Masseroli
npj Systems Biology and Applications 7 (1), 17, 2021
102021
Predicting drug synergism by means of non-negative matrix tri-factorization
P Pinoli, G Ceddia, S Ceri, M Masseroli
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (4 …, 2021
82021
Non-negative matrix tri-factorization for data integration and network-based drug repositioning
G Ceddia, P Pinoli, S Ceri, M Masseroli
2019 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2019
82019
Using GMQL-web for querying, downloading and integrating public with private genomic datasets
M Settino, A Bernasconi, G Ceddia, G Agapito, M Masseroli, M Cannataro
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
42019
A functional analysis of omic network embedding spaces reveals key altered functions in cancer
S Doria-Belenguer, A Xenos, G Ceddia, N Malod-Dognin, N Pržulj
Bioinformatics 39 (5), btad281, 2023
32023
Network modeling and analysis of normal and cancer gene expression data
G Ceddia, S Pidò, M Masseroli
International Meeting on Computational Intelligence Methods for …, 2019
22019
A multi-omics integrative approach unravels novel genes and pathways associated with senescence escape after targeted therapy in NRAS mutant melanoma
V Gureghian, H Herbst, I Kozar, K Mihajlovic, N Malod-Dognin, G Ceddia, ...
Cancer gene therapy 30 (10), 1330-1345, 2023
12023
A phenotype driven integrative framework uncovers molecular mechanisms of a rare hereditary thrombophilia
N Malod-Dognin, G Ceddia, M Gvozdenov, B Tomić, S Dunjić Manevski, ...
Plos one 18 (4), e0284084, 2023
12023
Identification of transcription factor high accumulation DNA zones
S Cascianelli, G Ceddia, A Marchesi, M Masseroli
BMC bioinformatics 24 (1), 395, 2023
2023
Machine Learning and Principles and Practice of Knowledge Discovery in Databases: International Workshops of ECML PKDD 2022, Grenoble, France, September 19–23, 2022 …
I Koprinska, P Mignone, R Guidotti, S Jaroszewicz, H Fröning, F Gullo, ...
Springer Nature, 2023
2023
Multi-omics integration of scRNA-seq time series data predicts new intervention points for Parkinson's disease
K Mihajlović, G Ceddia, N Malod-Dognin, G Novak, D Kyriakis, A Skupin, ...
bioRxiv, 2023.12. 12.570554, 2023
2023
Non-negative Matrix Tri-Factorization for data integration and knowledge inference on breast cancer subtyping
CR Rengifo, S Cascianelli, G Ceddia, M Masseroli
Proceedings of the 19th Conference on Computational Intelligence Methods for …, 2023
2023
The axes of biology: a novel axes-based network embedding paradigm to decipher the functional mechanisms of the cell.
S Doria-Belenguer, A Xenos, G Ceddia, N Malod-Dognin, N Pržulj
bioRxiv, 2023.07. 31.551263, 2023
2023
Computational methods for data-driven predictions and understanding of biological interactions
G Ceddia
Italy, 2021
2021
TFARM: Transcription Factor Associatio Rule
LN Martino
2019
Computational analysis and comparison of gene networks from TCGA normal and cancer data
G Ceddia, S Pido, M Masseroli
Proceedings of the 16th International Conference on Computational …, 2019
2019
Network-based approach to identify new indications for existing drugs in the DrugBank database
G Ceddia, P Pinoli, M Masseroli
BITS 2019: 16th Annual Meeting of the Bioinformatics Italian Society, 13-14, 2019
2019
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