Marinka Zitnik
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
10032013
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
3362018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
2152017
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge…, 2018
165*2018
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
157*2015
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
1412019
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
1192017
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
1102019
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
1072015
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
arXiv preprint arXiv:2005.00687, 2020
882020
Discovering disease-disease associations by fusing systems-level molecular data
M Žitnik, V Janjić, C Larminie, B Zupan, N Pržulj
Scientific Reports 3, 3202, 2013
872013
Gnnexplainer: Generating explanations for graph neural networks
R Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 9240, 2019
822019
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
762019
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
762018
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
M Stražar, M Žitnik, B Zupan, J Ule, T Curk
Bioinformatics 32 (10), 1527-1535, 2016
742016
NIMFA : A Python Library for Nonnegative Matrix Factorization
M Zitnik, B Zupan
Journal of Machine Learning Research 13, 849-853, 2012
702012
A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
J Carreras-Puigvert, M Zitnik, AS Jemth, M Carter, JE Unterlass, ...
Nature Communications 8 (1), 1541, 2017
522017
Large-scale analysis of disease pathways in the human interactome
M Agrawal*, M Zitnik*, (*first co-author), J Leskovec
Pacific Symposium on Biocomputing 23, 111--122, 2018
502018
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
482018
Network medicine framework for identifying drug repurposing opportunities for COVID-19
DM Gysi, Do Valle, M Zitnik, A Ameli, X Gan, O Varol, H Sanchez, ...
ArXiv, 2020
472020
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