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Rolf Backofen
Rolf Backofen
Professor für Bioinformatik, Universität Freiburg
Verified email at informatik.uni-freiburg.de
Title
Cited by
Cited by
Year
An updated evolutionary classification of CRISPR–Cas systems
KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ...
Nature reviews microbiology 13 (11), 722-736, 2015
30322015
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ...
Nature Reviews Microbiology 18 (2), 67-83, 2020
21072020
Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
D Schubert, C Bode, R Kenefeck, TZ Hou, JB Wing, A Kennedy, ...
Nature medicine 20 (12), 1410-1416, 2014
8992014
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
A Busch, AS Richter, R Backofen
Bioinformatics 24 (24), 2849-2856, 2008
6282008
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
PLoS computational biology 3 (4), e65, 2007
6042007
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
M Mann, PR Wright, R Backofen
Nucleic acids research 45 (W1), W435-W439, 2017
5782017
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ...
Nature 544 (7648), 115-119, 2017
4982017
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen
Rna 18 (5), 900-914, 2012
4032012
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
3822014
Computational molecular biology an introduction
S Levin
Wiley, 2000
3602000
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
R Gilsbach, S Preissl, BA Grüning, T Schnick, L Burger, V Benes, A Würch, ...
Nature communications 5 (1), 5288, 2014
3322014
Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
E Holmqvist, PR Wright, L Li, T Bischler, L Barquist, R Reinhardt, ...
The EMBO journal 35 (9), 991-1011, 2016
3272016
pyGenomeTracks: reproducible plots for multivariate genomic datasets
L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ...
Bioinformatics 37 (3), 422-423, 2021
3202021
GraphProt: modeling binding preferences of RNA-binding proteins
D Maticzka, SJ Lange, F Costa, R Backofen
Genome biology 15, 1-18, 2014
2762014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
2662013
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
J Wolff, L Rabbani, R Gilsbach, G Richard, T Manke, R Backofen, ...
Nucleic acids research 48 (W1), W177-W184, 2020
2552020
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
C Smith, S Heyne, AS Richter, S Will, R Backofen
Nucleic acids research 38 (suppl_2), W373-W377, 2010
2482010
MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
S Siebert, R Backofen
Bioinformatics 21 (16), 3352-3359, 2005
2322005
Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo
R Gilsbach, M Schwaderer, S Preissl, BA Grüning, D Kranzhöfer, ...
Nature communications 9 (1), 391, 2018
2272018
Pre-mRNA secondary structures influence exon recognition
M Hiller, Z Zhang, R Backofen, S Stamm
PLoS genetics 3 (11), e204, 2007
2252007
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