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Yuji Inagaki
Yuji Inagaki
Professor of Center of Computational Sciences, University of Tsukuba
Verified email at ccs.tsukuba.ac.jp
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Cited by
Cited by
Year
Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of “primitive” eukaryotes
AGB Simpson, Y Inagaki, AJ Roger
Molecular Biology and Evolution 23 (3), 615-625, 2006
2152006
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates
F Burki, Y Inagaki, J Bråte, JM Archibald, PJ Keeling, T Cavalier-Smith, ...
Genome Biology and Evolution 1, 231-238, 2009
1692009
Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
K Takishita, N Yubuki, N Kakizoe, Y Inagaki, T Maruyama
Extremophiles 11 (4), 563-576, 2007
1642007
Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
NJ Patron, Y Inagaki, PJ Keeling
Current Biology 17 (10), 887-891, 2007
1542007
A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1α
PJ Keeling, Y Inagaki
Proceedings of the National Academy of Sciences of USA 101 (43), 15380-15385, 2004
1232004
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies
Y Inagaki, E Susko, NM Fast, AJ Roger
Molecular Biology and Evolution 21 (7), 1340-1349, 2004
1152004
Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle
T Nakayama, R Kamikawa, G Tanifuji, Y Kashiyama, N Ohkouchi, ...
Proceedings of the National Academy of Sciences 111 (31), 11407-11412, 2014
1122014
Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group
MW Brown, AA Heiss, R Kamikawa, Y Inagaki, A Yabuki, AK Tice, ...
Genome Biology and Evolution 10 (2), 427-433, 2018
982018
Evolution of the eukaryotic translation termination system: origins of release factors
Y Inagaki, WF Doolittle
Molecular Biology and Evolution 17 (6), 882-889, 2000
982000
Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution
M Ehara, Y Inagaki, KI Watanabe, T Ohama
Current Genetics 37 (1), 29-33, 2000
842000
Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.
MM Leger, M Kolisko, R Kamikawa, CW Stairs, K Kume, I Čepička, ...
Nature Ecology & Evolution 1 (4), 0092, 2017
752017
Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity
Y Inagaki, C Blouin, WF Doolittle, AJ Roger
Nucleic Acids Research 30 (2), 532-544, 2002
752002
Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis.
Y Inagaki, JB Dacks, WF Doolittle, KI Watanabe, T Ohama
International Journal of Systematic and Evolutionary Microbiology 50 (6 …, 2000
732000
Capsaspora owczarzaki is an independent opisthokont lineage
I Ruiz-Trillo, Y Inagaki, LA Davis, S Sperstad, B Landfald, AJ Roger
Current Biology 14 (22), R946-R947, 2004
712004
A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
MA Minge, K Shalchian-Tabrizi, OK Tørresen, K Takishita, I Probert, ...
BMC Evolutionary Biology 10 (1), 191, 2010
692010
Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study
Y Inagaki, AGB Simpson, JB Dacks, AJ Roger
Systematic Biology 53 (4), 582-593, 2004
662004
Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position.
Y Inagaki, A Kojima, Y Bessho, H Hori, T Ohama, S Osawa
Journal of Molecular Biology 251 (4), 486-492, 1995
661995
Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista
A Yabuki, R Kamikawa, SA Ishikawa, M Kolisko, E Kim, AS Tanabe, ...
Scientific Reports 4, 4641, 2014
652014
Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
T Matsumoto, F Shinozaki, T Chikuni, A Yabuki, K Takishita, M Kawachi, ...
Protist 162 (2), 268-276, 2011
642011
Split introns in the genome of Giardia intestinalis are excised by spliceosome-mediated trans-splicing
R Kamikawa, Y Inagaki, M Tokoro, AJ Roger, T Hashimoto
Current Biology 21 (4), 311-315, 2011
602011
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