Denis Thieffry
Denis Thieffry
Professor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Paris
Verified email at ens.fr
Title
Cited by
Cited by
Year
Dynamical behaviour of biological regulatory networks—I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
R Thomas, D Thieffry, M Kaufman
Bulletin of mathematical biology 57 (2), 247-276, 1995
6571995
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
A Fauré, A Naldi, C Chaouiya, D Thieffry
Bioinformatics 22 (14), e124-e131, 2006
6082006
From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli
D Thieffry, AM Huerta, E Pérez‐Rueda, J Collado‐Vides
Bioessays 20 (5), 433-440, 1998
5961998
GOToolBox: functional analysis of gene datasets based on Gene Ontology
D Martin, C Brun, E Remy, P Mouren, D Thieffry, B Jacq
Genome biology 5 (12), R101, 2004
4392004
Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis.
L Mendoza, D Thieffry, ER Alvarez-Buylla
Bioinformatics (Oxford, England) 15 (7), 593-606, 1999
3711999
Dynamical behaviour of biological regulatory networks—II. Immunity control in bacteriophage lambda
D Thieffry, R Thomas
Bulletin of mathematical biology 57 (2), 277-297, 1995
2991995
RSAT 2011: regulatory sequence analysis tools
M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ...
Nucleic acids research 39 (suppl_2), W86-W91, 2011
2642011
A logical analysis of the Drosophila gap-gene system
L Sánchez, D Thieffry
Journal of theoretical Biology 211 (2), 115-141, 2001
2612001
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance
Ö Sahin, H Fröhlich, C Löbke, U Korf, S Burmester, M Majety, J Mattern, ...
BMC systems biology 3 (1), 1, 2009
2282009
RegulonDB: A database on transcriptional regulation in Escherichia coli
AM Huerta, H Salgado, D Thieffry, J Collado-Vides
Nucleic acids research 26 (1), 55-59, 1998
2251998
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
2232015
Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
É Remy, P Ruet, D Thieffry
Advances in Applied Mathematics 41 (3), 335-350, 2008
2202008
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
M Thomas-Chollier, C Herrmann, M Defrance, O Sand, D Thieffry, ...
Nucleic acids research 40 (4), e31-e31, 2012
2122012
Qualitative analysis of gene networks
D Thieffry, R Thomas
World Scientific, 1997
1941997
Logical modelling of regulatory networks with GINsim 2.3
A Naldi, D Berenguier, A Fauré, F Lopez, D Thieffry, C Chaouiya
Biosystems 97 (2), 134-139, 2009
1792009
C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells
B Di Stefano, JL Sardina, C van Oevelen, S Collombet, EM Kallin, ...
Nature 506 (7487), 235-239, 2014
1772014
GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks
AG Gonzalez, A Naldi, L Sanchez, D Thieffry, C Chaouiya
Biosystems 84 (2), 91-100, 2006
1752006
Mathematical modelling of cell-fate decision in response to death receptor engagement
L Calzone, L Tournier, S Fourquet, D Thieffry, B Zhivotovsky, E Barillot, ...
PLoS Comput Biol 6 (3), e1000702, 2010
1722010
Diversity and plasticity of Th cell types predicted from regulatory network modelling
A Naldi, J Carneiro, C Chaouiya, D Thieffry
PLoS Comput Biol 6 (9), e1000912, 2010
1612010
Integrative modelling of the influence of MAPK network on cancer cell fate decision
L Grieco, L Calzone, I Bernard-Pierrot, F Radvanyi, B Kahn-Perles, ...
PLoS Comput Biol 9 (10), e1003286, 2013
1422013
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