Alex N Nguyen Ba
Alex N Nguyen Ba
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TitleCited byYear
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
AN Nguyen Ba, A Pogoutse, N Provart, AM Moses
BMC Bioinformatics 10 (1), 202, 2009
A high-definition view of functional genetic variation from natural yeast genomes
A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ...
Molecular Biology and Evolution 31 (4), 872-888, 2014
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
AN Nguyen Ba, BJ Yeh, D van Dyk, AR Davidson, BJ Andrews, EL Weiss, ...
Science Signaling 5 (215), rs1-rs1, 2012
Evolution of characterized phosphorylation sites in budding yeast
AN Nguyen Ba, AM Moses
Molecular Biology and Evolution 27 (9), 2027-2037, 2010
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
G Liti, AN Nguyen Ba, M Blythe, CA Müller, A Bergström, FA Cubillos, ...
BMC Genomics 14 (1), 69, 2013
A quantitative literature-curated gold standard for kinase-substrate pairs
S Sharifpoor*, AN Nguyen Ba*, JY Young, D van Dyk, H Friesen, ...
Genome Biology 12 (4), 1, 2011
The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism
G Gógl, KD Schneider, BJ Yeh, N Alam, AN Nguyen Ba, AM Moses, ...
PLoS Biology 13 (5), e1002146, 2015
Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences
AN Nguyen Ba, B Strome, JJ Hua, J Desmond, I Gagnon-Arsenault, ...
PLoS Computational Biology 10 (12), e1003977, 2014
Predicting kinase substrates using conservation of local motif density
ACW Lai, AN Nguyen Ba, AM Moses
Bioinformatics 28 (7), 962-969, 2012
Polymorphism analysis reveals reduced negative selection and elevated rate of insertions and deletions in intrinsically disordered protein regions
T Khan, GM Douglas, P Patel, AN Nguyen Ba, AM Moses
Genome Biology and Evolution 7 (6), 1815-1826, 2015
Selection maintains signaling function of a highly diverged intrinsically disordered region
T Zarin, CN Tsai, AN Nguyen Ba, AM Moses
Proceedings of the National Academy of Sciences, 201614787, 2017
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library
JY Youn, H Friesen, AN Nguyen Ba, W Liang, V Messier, MJ Cox, ...
G3: Genes| Genomes| Genetics, g3. 116.038471, 2017
Experimental Studies of Evolutionary Dynamics in Microbes
I Cvijović, AN Nguyen Ba, MM Desai
Trends in Genetics, 2018
Proteome-wide signatures of function in highly diverged intrinsically disordered regions
T Zarin, B Strome, ANN Ba, S Alberti, JD Forman-Kay, AM Moses
bioRxiv, 578716, 2019
Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments.
AN Nguyen Ba, B Strome, S Osman, EA Legere, T Zarin, AM Moses
PLoS Genetics 13 (4), 2017
Modular epistasis and the compensatory evolution of gene deletion mutants
JIR Echenique, S Kryazhimskiy, AN Nguyen Ba, MM Desai
PLoS Genetics 15 (2), e1007958, 2019
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity
B Strome, IS Hsu, MLC Man, T Zarin, AN Nguyen Ba, AM Moses
BMC systems biology 12 (1), 75, 2018
Evolthon: A community endeavor to evolve lab evolution
SK Strauss, D Schirman, G Jona, AN Brooks, AM Kunjapur, ...
PLoS biology 17 (3), e3000182, 2019
Chance and Necessity in the Pleiotropic Consequences of Adaptation for Budding Yeast
ER Jerison, ANN Ba, MM Desai, S Kryazhimskiy
bioRxiv, 724617, 2019
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