Alex N Nguyen Ba
Alex N Nguyen Ba
Verified email at fas.harvard.edu
TitleCited byYear
Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
12162009
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
AN Nguyen Ba, A Pogoutse, N Provart, AM Moses
BMC Bioinformatics 10 (1), 202, 2009
3152009
A high-definition view of functional genetic variation from natural yeast genomes
A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ...
Molecular Biology and Evolution 31 (4), 872-888, 2014
1902014
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
AN Nguyen Ba, BJ Yeh, D van Dyk, AR Davidson, BJ Andrews, EL Weiss, ...
Science Signaling 5 (215), rs1-rs1, 2012
812012
Evolution of characterized phosphorylation sites in budding yeast
AN Nguyen Ba, AM Moses
Molecular Biology and Evolution 27 (9), 2027-2037, 2010
622010
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
G Liti, AN Nguyen Ba, M Blythe, CA Müller, A Bergström, FA Cubillos, ...
BMC Genomics 14 (1), 69, 2013
572013
A quantitative literature-curated gold standard for kinase-substrate pairs
S Sharifpoor*, AN Nguyen Ba*, JY Young, D van Dyk, H Friesen, ...
Genome Biology 12 (4), 1, 2011
522011
The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism
G Gógl, KD Schneider, BJ Yeh, N Alam, AN Nguyen Ba, AM Moses, ...
PLoS Biology 13 (5), e1002146, 2015
352015
Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences
AN Nguyen Ba, B Strome, JJ Hua, J Desmond, I Gagnon-Arsenault, ...
PLoS Computational Biology 10 (12), e1003977, 2014
212014
Predicting kinase substrates using conservation of local motif density
ACW Lai, AN Nguyen Ba, AM Moses
Bioinformatics 28 (7), 962-969, 2012
192012
Polymorphism analysis reveals reduced negative selection and elevated rate of insertions and deletions in intrinsically disordered protein regions
T Khan, GM Douglas, P Patel, AN Nguyen Ba, AM Moses
Genome Biology and Evolution 7 (6), 1815-1826, 2015
172015
Selection maintains signaling function of a highly diverged intrinsically disordered region
T Zarin, CN Tsai, AN Nguyen Ba, AM Moses
Proceedings of the National Academy of Sciences, 201614787, 2017
112017
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library
JY Youn, H Friesen, AN Nguyen Ba, W Liang, V Messier, MJ Cox, ...
G3: Genes| Genomes| Genetics, g3. 116.038471, 2017
82017
Experimental Studies of Evolutionary Dynamics in Microbes
I Cvijović, AN Nguyen Ba, MM Desai
Trends in Genetics, 2018
62018
Proteome-wide signatures of function in highly diverged intrinsically disordered regions
T Zarin, B Strome, ANN Ba, S Alberti, JD Forman-Kay, AM Moses
bioRxiv, 578716, 2019
32019
Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments.
AN Nguyen Ba, B Strome, S Osman, EA Legere, T Zarin, AM Moses
PLoS Genetics 13 (4), 2017
32017
Modular epistasis and the compensatory evolution of gene deletion mutants
JIR Echenique, S Kryazhimskiy, AN Nguyen Ba, MM Desai
PLoS Genetics 15 (2), e1007958, 2019
22019
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity
B Strome, IS Hsu, MLC Man, T Zarin, AN Nguyen Ba, AM Moses
BMC systems biology 12 (1), 75, 2018
22018
Evolthon: A community endeavor to evolve lab evolution
SK Strauss, D Schirman, G Jona, AN Brooks, AM Kunjapur, ...
PLoS biology 17 (3), e3000182, 2019
12019
Chance and Necessity in the Pleiotropic Consequences of Adaptation for Budding Yeast
ER Jerison, ANN Ba, MM Desai, S Kryazhimskiy
bioRxiv, 724617, 2019
2019
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Articles 1–20