| Population genomics of domestic and wild yeasts G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ... Nature 458 (7236), 337-341, 2009 | 1680 | 2009 |
| NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction AN Nguyen Ba, A Pogoutse, N Provart, AM Moses BMC Bioinformatics 10 (1), 202, 2009 | 715 | 2009 |
| A high-definition view of functional genetic variation from natural yeast genomes A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ... Molecular Biology and Evolution 31 (4), 872-888, 2014 | 317 | 2014 |
| Proteome-wide signatures of function in highly diverged intrinsically disordered regions T Zarin, B Strome, AN Nguyen Ba, S Alberti, JD Forman-Kay, AM Moses Elife 8, e46883, 2019 | 159 | 2019 |
| Proteome-wide discovery of evolutionary conserved sequences in disordered regions AN Nguyen Ba, BJ Yeh, D van Dyk, AR Davidson, BJ Andrews, EL Weiss, ... Science Signaling 5 (215), rs1-rs1, 2012 | 131 | 2012 |
| High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast AN Nguyen Ba*, I Cvijović*, JI Rojas Echenique*, KR Lawrence, ... Nature 575 (7783), 494-499, 2019 | 120 | 2019 |
| High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome G Liti, AN Nguyen Ba, M Blythe, CA Müller, A Bergström, FA Cubillos, ... BMC Genomics 14 (1), 69, 2013 | 107 | 2013 |
| Exploring whole-genome duplicate gene retention with complex genetic interaction analysis E Kuzmin, B VanderSluis, AN Nguyen Ba, W Wang, EN Koch, M Usaj, ... Science 368 (6498), eaaz5667, 2020 | 91 | 2020 |
| A quantitative literature-curated gold standard for kinase-substrate pairs S Sharifpoor*, AN Nguyen Ba*, JY Young, D van Dyk, H Friesen, ... Genome Biology 12 (4), 1, 2011 | 83 | 2011 |
| Evolution of characterized phosphorylation sites in budding yeast AN Nguyen Ba, AM Moses Molecular Biology and Evolution 27 (9), 2027-2037, 2010 | 79 | 2010 |
| Selection maintains signaling function of a highly diverged intrinsically disordered region T Zarin, CN Tsai, AN Nguyen Ba, AM Moses Proceedings of the National Academy of Sciences, 201614787, 2017 | 77 | 2017 |
| Phenotypic and molecular evolution across 10,000 generations in laboratory budding yeast populations MS Johnson, S Gopalakrishnan, J Goyal, ME Dillingham, CW Bakerlee, ... Elife 10, e63910, 2021 | 67 | 2021 |
| Microwave-generated steam decontamination of N95 respirators utilizing universally accessible materials. KE Zulauf, AB Green, AN Nguyen Ba, T Jagdish, D Reif, R Seeley, A Dale, ... mBio 11 (e00997-20), 2020 | 66 | 2020 |
| Modular epistasis and the compensatory evolution of gene deletion mutants JI Rojas Echenique, S Kryazhimskiy, AN Nguyen Ba, MM Desai PLoS Genetics 15 (2), e1007958, 2019 | 57 | 2019 |
| The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism G Gógl, KD Schneider, BJ Yeh, N Alam, AN Nguyen Ba, AM Moses, ... PLoS Biology 13 (5), e1002146, 2015 | 50 | 2015 |
| Chance and necessity in the pleiotropic consequences of adaptation for budding yeast ER Jerison, AN Nguyen Ba, MM Desai, S Kryazhimskiy Nature Ecology & Evolution 4 (4), 601-611, 2020 | 49 | 2020 |
| Barcoded bulk QTL mapping reveals highly polygenic and epistatic architecture of complex traits in yeast AN Nguyen Ba*, KR Lawrence*, A Rego-Costa*, S Gopalakrishnan, ... eLife 11, e73983, 2022 | 47 | 2022 |
| Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences AN Nguyen Ba, B Strome, JJ Hua, J Desmond, I Gagnon-Arsenault, ... PLoS Computational Biology 10 (12), e1003977, 2014 | 47 | 2014 |
| Experimental Studies of Evolutionary Dynamics in Microbes I Cvijović, AN Nguyen Ba, MM Desai Trends in Genetics 34 (9), 693-703, 2018 | 44 | 2018 |
| Idiosyncratic epistasis leads to global fitness–correlated trends CW Bakerlee*, AN Nguyen Ba*, Y Shulgina, JI Rojas Echenique, ... Science 376 (6593), 630-635, 2022 | 42 | 2022 |
