Sandor  Vajda
Sandor Vajda
Professor of Biomedical Engineering, Boston University
Verified email at bu.edu - Homepage
Title
Cited by
Cited by
Year
ClusPro: an automated docking and discrimination method for the prediction of protein complexes
SR Comeau, DW Gatchell, S Vajda, CJ Camacho
Bioinformatics 20 (1), 45-50, 2004
9562004
The ClusPro web server for protein–protein docking
D Kozakov, DR Hall, B Xia, KA Porter, D Padhorny, C Yueh, D Beglov, ...
Nature protocols 12 (2), 255, 2017
8402017
ClusPro: a fully automated algorithm for protein–protein docking
SR Comeau, DW Gatchell, S Vajda, CJ Camacho
Nucleic acids research 32 (suppl_2), W96-W99, 2004
7822004
PIPER: an FFT‐based protein docking program with pairwise potentials
D Kozakov, R Brenke, SR Comeau, S Vajda
Proteins: Structure, Function, and Bioinformatics 65 (2), 392-406, 2006
7732006
CAPRI: a critical assessment of predicted interactions
J Janin, K Henrick, J Moult, LT Eyck, MJE Sternberg, S Vajda, I Vakser, ...
Proteins: Structure, Function, and Bioinformatics 52 (1), 2-9, 2003
6682003
How good is automated protein docking?
D Kozakov, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, S Vajda
Proteins: Structure, Function, and Bioinformatics 81 (12), 2159-2166, 2013
4552013
Principal component analysis of kinetic models
S Vajda, P Valko, T Turanyi
International Journal of Chemical Kinetics 17 (1), 55-81, 1985
4211985
Anchor residues in protein–protein interactions
D Rajamani, S Thiel, S Vajda, CJ Camacho
Proceedings of the National Academy of Sciences 101 (31), 11287-11292, 2004
3922004
Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques
R Brenke, D Kozakov, GY Chuang, D Beglov, D Hall, MR Landon, ...
Bioinformatics 25 (5), 621-627, 2009
3852009
The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins
D Kozakov, LE Grove, DR Hall, T Bohnuud, SE Mottarella, L Luo, B Xia, ...
Nature protocols 10 (5), 733-755, 2015
3142015
Similarity transformation approach to structural identifiability of nonlinear compartmental models
S Vajda, KR Godfrey, H Rabitz
Math. Biosci 93 (2), 217-248, 1989
267*1989
How proteins bind macrocycles
EA Villar, D Beglov, S Chennamadhavuni, JA Porco, D Kozakov, S Vajda, ...
Nature chemical biology 10 (9), 723-731, 2014
2602014
Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19
D Kozakov, DR Hall, D Beglov, R Brenke, SR Comeau, Y Shen, K Li, ...
Proteins: Structure, Function, and Bioinformatics 78 (15), 3124-3130, 2010
2552010
Convergence and combination of methods in protein–protein docking
S Vajda, D Kozakov
Current opinion in structural biology 19 (2), 164-170, 2009
2462009
Free energy landscapes of encounter complexes in protein-protein association
CJ Camacho, Z Weng, S Vajda, C DeLisi
Biophysical journal 76 (3), 1166-1178, 1999
2351999
Structural conservation of druggable hot spots in protein–protein interfaces
D Kozakov, DR Hall, GY Chuang, R Cencic, R Brenke, LE Grove, ...
Proceedings of the National Academy of Sciences 108 (33), 13528-13533, 2011
2252011
Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions
DW Ritchie, D Kozakov, S Vajda
Bioinformatics 24 (17), 1865-1873, 2008
2202008
Reaction rate analysis of complex kinetic systems
T Turanyi, T Berces, S Vajda
International Journal of Chemical Kinetics 21 (2), 83-99, 1989
2201989
Effect of conformational flexibility and solvation on receptor-ligand binding free energies
S Vajda, Z Wheng, R Rosenfeld, C DeLisi
Biochemistry 33 (47), 13977-13988, 1994
1861994
Global identifiability of the parameters of nonlinear systems with specified inputs: a comparison of methods
MJ Chappell, KR Godfrey, S Vajda
Mathematical Biosciences 102 (1), 41-73, 1990
1821990
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