Nitin Baliga
Nitin Baliga
Professor
Verified email at systemsbiology.org
Title
Cited by
Cited by
Year
Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
190552003
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
8162000
Peroxiredoxins are conserved markers of circadian rhythms
RS Edgar, EW Green, Y Zhao, G Van Ooijen, M Olmedo, X Qin, Y Xu, ...
Nature 485 (7399), 459-464, 2012
6782012
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (3), S56-S68, 2010
6012010
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7 (5), R36, 2006
5452006
CTCF physically links cohesin to chromatin
ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, ...
Proceedings of the National Academy of Sciences 105 (24), 8309-8314, 2008
5172008
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3442004
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3062007
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7 (1), 280, 2006
2892006
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
PT Shannon, DJ Reiss, R Bonneau, NS Baliga
BMC bioinformatics 7 (1), 1-13, 2006
1902006
Catabolite control protein A (CcpA) contributes to virulence and regulation of sugar metabolism in Streptococcus pneumoniae
R Iyer, NS Baliga, A Camilli
Journal of bacteriology 187 (24), 8340-8349, 2005
1902005
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
NS Baliga, SJ Bjork, R Bonneau, M Pan, C Iloanusi, MCH Kottemann, ...
Genome research 14 (6), 1025-1035, 2004
1722004
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
NS Baliga, M Pan, YA Goo, CY Eugene, DR Goodlett, K Dimitrov, ...
Proceedings of the National Academy of Sciences 99 (23), 14913-14918, 2002
1652002
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
CL Plaisier, M Pan, NS Baliga
Genome research 22 (11), 2302-2314, 2012
1452012
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
1382009
General transcription factor specified global gene regulation in archaea
MT Facciotti, DJ Reiss, M Pan, A Kaur, M Vuthoori, R Bonneau, ...
Proceedings of the National Academy of Sciences 104 (11), 4630-4635, 2007
1302007
The DNA-binding network of Mycobacterium tuberculosis
KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
Nature communications 6, 5829, 2015
1242015
Is gene expression in Halobacterium NRC‐1 regulated by multiple TBP and TFB transcription factors? MicroCorrespondence
NS Baliga, YA Goo, WV Ng, L Hood, CJ Daniels, S DasSarma
Molecular microbiology 36 (5), 1184-1185, 2000
1222000
Long-term response of oceans to CO2 removal from the atmosphere
S Mathesius, M Hofmann, K Caldeira, HJ Schellnhuber
Nature Climate Change 5 (12), 1107-1113, 2015
111*2015
Adaptation of cells to new environments
AN Brooks, S Turkarslan, KD Beer, F Yin Lo, NS Baliga
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (5), 544-561, 2011
1102011
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Articles 1–20