| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 522 | 2016 |
| Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review S Sheikhalishahi, R Miotto, JT Dudley, A Lavelli, F Rinaldi, V Osmani JMIR Medical Informatics 7 (2), e12239, 2019 | 325 | 2019 |
| BioC: A minimalist approach to interoperability for biomedical text processing DC Comeau, RI Doğan, P Ciccarese, KB Cohen, M Krallinger, F Leitner, ... Database 2013, bat064, 2013 | 197 | 2013 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (S8), S3, 2011 | 188 | 2011 |
| FACILE: Description of the NE System Used for MUC-7 WJ Black, F Rinaldi, D Mowatt Proceedings of the 7th Message Understanding Conference, 1998 | 165 | 1998 |
| The gene normalization task in BioCreative III Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ... BMC bioinformatics 12 (S8), S2, 2011 | 164 | 2011 |
| The generalized upper model 2.0 JA Bateman, R Henschel, F Rinaldi Proceedings of the ECAI94 Workshop: Comparison of Implemented Ontologies, 1995 | 149 | 1995 |
| Exploiting paraphrases in a question answering system F Rinaldi, J Dowdall, K Kaljurand, M Hess, D Mollá Proceedings of the second international workshop on Paraphrasing-Volume 16 …, 2003 | 105 | 2003 |
| BioCreative III interactive task: an overview CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC bioinformatics 12 (S8), S4, 2011 | 101 | 2011 |
| Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach F Rinaldi, G Schneider, K Kaljurand, M Hess, C Andronis, O Konstandi, ... Artificial intelligence in medicine 39 (2), 127-136, 2007 | 101 | 2007 |
| The Generalized [Italian, German, French] Upper Model J Bateman, B Magnini, F Rinaldi Proceedings of the 11th European Conference on Artificial Intelligence [ECAI …, 1994 | 101 | 1994 |
| OntoGene in BioCreative II. 5 F Rinaldi, G Schneider, K Kaljurand, S Clematide, T Vachon, M Romacker IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 7 …, 2010 | 87 | 2010 |
| OntoGene in BioCreative II F Rinaldi, T Kappeler, K Kaljurand, G Schneider, M Klenner, S Clematide, ... Genome Biology 9 (Suppl 2), S13, 2008 | 81 | 2008 |
| Assessment of NER solutions against the first and second CALBC Silver Standard Corpus D Rebholz-Schuhmann, AJ Yepes, C Li, S Kafkas, I Lewin, N Kang, ... Journal of Biomedical Semantics 2 (5), 1-12, 2011 | 77 | 2011 |
| An environment for relation mining over richly annotated corpora: the case of GENIA F Rinaldi, G Schneider, K Kaljurand, M Hess, M Romacker BMC bioinformatics 7 (S3), S3, 2006 | 76 | 2006 |
| Mining relations in the GENIA corpus F Rinaldi, G Schneider, K Kaljurand, J Dowdall, C Andronis, A Persidis, ... Proceedings of the Second European Workshop on Data Mining and Text Mining …, 2004 | 65 | 2004 |
| Answering questions in the genomics domain F Rinaldi, J Dowdall, G Schneider, A Persidis Proceedings of the ACL 2004 Workshop on Question Answering in Restricted …, 2004 | 63 | 2004 |
| Attempto controlled english: A knowledge representation language readable by humans and machines NE Fuchs, S Höfler, K Kaljurand, F Rinaldi, G Schneider Reasoning Web, 213-250, 2005 | 55 | 2005 |
| Web conversations about complementary and alternative medicines and cancer: content and sentiment analysis M Mazzocut, I Truccolo, M Antonini, F Rinaldi, P Omero, E Ferrarin, ... Journal of medical Internet research 18 (6), e120, 2016 | 49 | 2016 |
| Entity recognition in the biomedical domain using a hybrid approach M Basaldella, L Furrer, C Tasso, F Rinaldi Journal of Biomedical Semantics 8 (1), 51, 2017 | 44 | 2017 |
Gerold SchneiderProfessor of Computational Linguistics, Head of LiRI NLP group, ZurichVerified email at ifi.uzh.ch
