Tin Nguyen
Title
Cited by
Cited by
Year
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
136*2019
A novel approach for data integration and disease subtyping
T Nguyen, R Tagett, D Diaz, S Draghici
Genome research 27 (12), 2025-2039, 2017
752017
Identifying significantly impacted pathways: a comprehensive review and assessment
TM Nguyen, A Shafi, T Nguyen, S Draghici
Genome biology 20 (1), 1-15, 2019
602019
A survey of the approaches for identifying differential methylation using bisulfite sequencing data
A Shafi, C Mitrea, T Nguyen, S Draghici
Briefings in bioinformatics 19 (5), 737-753, 2018
452018
PINSPlus: a tool for tumor subtype discovery in integrated genomic data
H Nguyen, S Shrestha, S Draghici, T Nguyen
Bioinformatics 35 (16), 2843-2846, 2019
262019
A novel bi-level meta-analysis approach: Applied to biological pathway analysis
T Nguyen, R Tagett, M Donato, C Mitrea, S Draghici
Bioinformatics 32 (3), 409-416, 2016
242016
A comprehensive survey of tools and software for active subnetwork identification
H Nguyen, S Shrestha, D Tran, A Shafi, S Draghici, T Nguyen
Frontiers in genetics 10, 155, 2019
222019
Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
T Nguyen, D Diaz, R Tagett, S Draghici
Scientific reports 6 (1), 1-14, 2016
222016
Network‐Based Approaches for Pathway Level Analysis
T Nguyen, C Mitrea, S Draghici
Current Protocols in Bioinformatics 61 (1), 8.25.1--8.25.24, 2018
212018
DANUBE: Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions—Applied to Biological Pathway Analysis
T Nguyen, C Mitrea, R Tagett, S Draghici
Proceedings of the IEEE, 2016
192016
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis
A Shafi, T Nguyen, A Peyvandipour, S Draghici
Bioinformatics 36 (2), 487-495, 2020
162020
Functional analysis tools for post‐translational modification: a post‐translational modification database for analysis of proteins and metabolic pathways
ER Cruz, H Nguyen, T Nguyen, IS Wallace
The Plant Journal 99 (5), 1003-1013, 2019
162019
Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data
J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ...
Life science alliance 3 (11), 2020
15*2020
A multi-cohort and multi-omics meta-analysis framework to identify network-based gene signatures
A Shafi, T Nguyen, A Peyvandipour, H Nguyen, S Draghici
Frontiers in genetics 10, 159, 2019
142019
MicroRNA-augmented pathways (mirAP) and their applications to pathway analysis and disease subtyping
D Diaz, M Donato, T Nguyen, S Draghici
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017, 390-401, 2017
132017
A systems biology approach for unsupervised clustering of high-dimensional data
D Diaz, T Nguyen, S Draghici
International Workshop on Machine Learning, Optimization, and Big Data, 193-203, 2016
92016
Fast and precise single-cell data analysis using a hierarchical autoencoder
D Tran, H Nguyen, B Tran, C La Vecchia, HN Luu, T Nguyen
Nature communications 12 (1), 1-10, 2021
82021
A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data
H Nguyen, D Tran, B Tran, B Pehlivan, T Nguyen
Briefings in bioinformatics 22 (3), bbaa190, 2021
72021
Markovbin: An algorithm to cluster metagenomic reads using a mixture modeling of hierarchical distributions
TC Nguyen, D Zhu
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
72013
iQuant: A fast yet accurate GUI tool for transcript quantification
TC Nguyen, N Deng, G Xu, Z Duan, D Zhu
2011 IEEE International Conference on Bioinformatics and Biomedicine …, 2011
72011
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Articles 1–20