Bioinformatics Lead @ Division of Developmental Biology and Center for Stem Cell and Organoid
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Differentiation of human pluripotent stem cells into colonic organoids via transient activation of BMP signaling
JO Múnera, N Sundaram, SA Rankin, D Hill, C Watson, M Mahe, ...
Cell stem cell 21 (1), 51-64. e6, 2017
Xenbase: a genomic, epigenomic and transcriptomic model organism database
K Karimi, JD Fortriede, VS Lotay, KA Burns, DZ Wang, ME Fisher, TJ Pells, ...
Nucleic acids research 46 (D1), D861-D868, 2018
Esophageal organoids from human pluripotent stem cells delineate Sox2 functions during esophageal specification
SL Trisno, KED Philo, KW McCracken, EM Catá, S Ruiz-Torres, ...
Cell Stem Cell 23 (4), 501-515. e7, 2018
Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs
ML Stevens, P Chaturvedi, SA Rankin, M Macdonald, S Jagannathan, ...
Development 144 (7), 1283-1295, 2017
ETS transcription factors Etv2 and Fli1b are required for tumor angiogenesis
K Baltrunaite, MP Craig, SP Desai, P Chaturvedi, RN Pandey, RS Hegde, ...
Angiogenesis 20 (3), 307-323, 2017
Differential miRNA expression in cells and matrix vesicles in vascular smooth muscle cells from rats with kidney disease
P Chaturvedi, NX Chen, K O’Neill, JN McClintick, SM Moe, SC Janga
PLoS One 10 (6), e0131589, 2015
Xenbase: facilitating the use of Xenopus to model human disease
MJ Nenni, ME Fisher, C James-Zorn, TJ Pells, V Ponferrada, S Chu, ...
Frontiers in physiology 10, 154, 2019
Osr1 functions downstream of Hedgehog pathway to regulate foregut development
L Han, J Xu, E Grigg, M Slack, P Chaturvedi, R Jiang, AM Zorn
Developmental biology 427 (1), 72-83, 2017
Identification of Osr2 transcriptional target genes in palate development
X Fu, J Xu, P Chaturvedi, H Liu, R Jiang, Y Lan
Journal of dental research 96 (12), 1451-1458, 2017
Glycosylphosphatidylinositol biosynthesis and remodeling are required for neural tube closure, heart development, and cranial neural crest cell survival
M Lukacs, T Roberts, P Chatuverdi, RW Stottmann
Elife 8, e45248, 2019
Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm diversification during foregut organogenesis
L Han, P Chaturvedi, K Kishimoto, H Koike, T Nasr, K Iwasawa, ...
bioRxiv, 756825, 2020
Understanding mechanisms of GLI-mediated transcription during craniofacial development and disease using the ciliopathic mutant, talpid2
YT Chang, P Chaturvedi, EN Schock, SA Brugmann
Frontiers in physiology 7, 468, 2016
Uncovering RNA binding proteins associated with age and gender during liver maturation
P Chaturvedi, Y Neelamraju, W Arif, A Kalsotra, SC Janga
Scientific reports 5, 9512, 2015
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
JD Fortriede, TJ Pells, S Chu, P Chaturvedi, DZ Wang, ME Fisher, ...
Nucleic Acids Research 48 (D1), D776-D782, 2020
Nubp2 is required for cranial neural crest survival in the mouse
A DiStasio, D Paulding, P Chaturvedi, RW Stottmann
Developmental Biology 458 (2), 189-199, 2020
Role of Integrated MicroRNA-mRNA Network in Human Hepatic Fat Accumulation and Non-Alcoholic Fatty Liver Disease: 664
R Srivastava, X Wang, J Lin, R Wei, P Chaturvedi, N Chalasani, S Janga, ...
Hepatology 58, 2013
Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis
L Han, P Chaturvedi, K Kishimoto, H Koike, T Nasr, K Iwasawa, ...
Nature Communications 11 (1), 1-16, 2020
Disruption of a Hedgehog-Foxf1-Rspo2 Signaling Axis Leads to Tracheomalacia and a Loss of Sox9+ Tracheal Chondrocytes
T Nasr, P Chaturvedi, K Agarwal, JL Kinney, K Daniels, SL Trisno, ...
bioRxiv, 2020
Age-Dependent Changes in the Progenitor Translatome Coordinated in part by Tsc1 Increase Perception of Signaling Inputs to End Nephrogenesis
EW Brunskill, A Jarmas, P Chaturvedi, R Kopan
bioRxiv, 2020
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endodermal gene regulatory network
S Mukherjee, P Chaturvedi, SA Rankin, MB Fish, M Wizla, KD Paraiso, ...
bioRxiv, 2020
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