Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature Biotechnology 37 (8), 907-915, 2019 | 7088 | 2019 |
Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N Y Zhang, C Park, C Bennett, M Thornton, D Kim Genome Research 31 (7), 1290-1295, 2021 | 128 | 2021 |
BNT162b2-induced neutralizing and non-neutralizing antibody functions against SARS-CoV-2 diminish with age TA Bates, P Lu, YJ Kang, D Schoen, M Thornton, SK McBride, C Park, ... Cell Reports 41 (4), 111544, 2022 | 19 | 2022 |
Automated classification of cytogenetic abnormalities in hematolymphoid neoplasms A Cox, C Park, P Koduru, K Wilson, O Weinberg, W Chen, R García, ... Bioinformatics 38 (5), 1420-1426, 2022 | 8 | 2022 |
hisat2 D Kim, J Paggi, C Park, C Bennett, S Salzberg Github, 0 | 5* | |
SeqWho: reliable, rapid determination of sequence file identity using k-mer frequencies in Random Forest classifiers C Bennett, M Thornton, C Park, G Henry, Y Zhang, V Malladi, D Kim Bioinformatics 38 (7), 1830-1837, 2022 | 3 | 2022 |
HISAT-3N: a rapid and accurate three-nucleotide sequence aligner Y Zhang, C Park, C Bennett, M Thornton, D Kim bioRxiv, 2020.12. 15.422906, 2020 | 2 | 2020 |
Automated classification of cytogenetic abnormalities in hematolymphoid neoplasms (vol 38, pg 1420, 2022) A Cox, C Park, P Koduru, K Wilson, O Weinberg, W Chen, R Garcia, ... BIOINFORMATICS 39 (1), 2023 | | 2023 |
BNT162b2 induced neutralizing and non-neutralizing antibody functions against SARSCoV-2 diminish with age (preprint) T Bates, P Lu, Y jin Kang, D Schoen, M Thornton, S McBride, C Park, ... | | 2022 |
SeqWho: Reliable, rapid determination of sequence file identity using k-mer frequencies C Bennett, M Thornton, C Park, G Henry, Y Zhang, VS Malladi, D Kim bioRxiv, 2021.03. 10.434827, 2021 | | 2021 |