| Coexpression analysis of human genes across many microarray data sets HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis Genome research 14 (6), 1085-1094, 2004 | 934 | 2004 |
| Molecular and functional heterogeneity of hyperpolarization-activated pacemaker channels in the mouse CNS B Santoro, S Chen, A Lüthi, P Pavlidis, GP Shumyatsky, GR Tibbs, ... Journal of Neuroscience 20 (14), 5264-5275, 2000 | 701 | 2000 |
| Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model KL Stark, B Xu, A Bagchi, WS Lai, H Liu, R Hsu, X Wan, P Pavlidis, ... Nature genetics 40 (6), 751-760, 2008 | 657 | 2008 |
| Zac1 regulates an imprinted gene network critically involved in the control of embryonic growth A Varrault, C Gueydan, A Delalbre, A Bellmann, S Houssami, C Aknin, ... Developmental cell 11 (5), 711-722, 2006 | 514 | 2006 |
| Gene functional classification from heterogeneous data P Pavlidis, J Weston, J Cai, WN Grundy Proceedings of the fifth annual international conference on Computational …, 2001 | 424 | 2001 |
| Matrix2png: a utility for visualizing matrix data P Pavlidis, WS Noble Bioinformatics 19 (2), 295-296, 2003 | 409 | 2003 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 401 | 2016 |
| De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability SE McCarthy, J Gillis, M Kramer, J Lihm, S Yoon, Y Berstein, M Mistry, ... Molecular psychiatry 19 (6), 652-658, 2014 | 382 | 2014 |
| ErmineJ: tool for functional analysis of gene expression data sets H Lee, W Braynen, K Keshav, P Pavlidis BMC bioinformatics 6 (1), 269, 2005 | 332 | 2005 |
| Learning gene functional classifications from multiple data types P Pavlidis, J Weston, J Cai, WS Noble Journal of computational biology 9 (2), 401-411, 2002 | 332 | 2002 |
| Analysis of strain and regional variation in gene expression in mouse brain P Pavlidis, WS Noble Genome Biol 2 (10), 0042, 2001 | 330 | 2001 |
| Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy A Muchir, P Pavlidis, V Decostre, AJ Herron, T Arimura, G Bonne, ... Journal of Clinical Investigation 117 (5), 1282, 2007 | 316 | 2007 |
| Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms M Barnes, J Freudenberg, S Thompson, B Aronow, P Pavlidis Nucleic acids research 33 (18), 5914, 2005 | 308 | 2005 |
| Inducible enhancement of memory storage and synaptic plasticity in transgenic mice expressing an inhibitor of ATF4 (CREB-2) and C/EBP proteins A Chen, IA Muzzio, G Malleret, D Bartsch, M Verbitsky, P Pavlidis, ... Neuron 39 (4), 655-669, 2003 | 305 | 2003 |
| miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment JP Lopez, R Lim, C Cruceanu, L Crapper, C Fasano, B Labonte, ... Nature medicine 20 (7), 764-768, 2014 | 299 | 2014 |
| Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex P Pavlidis, J Qin, V Arango, JJ Mann, E Sibille Neurochemical research 29 (6), 1213-1222, 2004 | 282 | 2004 |
| Transcriptional and behavioral interaction between 22q11. 2 orthologs modulates schizophrenia-related phenotypes in mice M Paterlini, SS Zakharenko, WS Lai, J Qin, H Zhang, J Mukai, ... Nature neuroscience 8 (11), 1586-1594, 2005 | 279 | 2005 |
| Hierarchical model of gene regulation by transforming growth factor β YC Yang, E Piek, J Zavadil, D Liang, D Xie, J Heyer, P Pavlidis, ... Proceedings of the National Academy of Sciences 100 (18), 10269-10274, 2003 | 272 | 2003 |
| Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons C Nagy, M Maitra, A Tanti, M Suderman, JF Théroux, MA Davoli, ... Nature neuroscience 23 (6), 771-781, 2020 | 267 | 2020 |
| “Guilt by association” is the exception rather than the rule in gene networks J Gillis, P Pavlidis PLoS computational biology 8 (3), e1002444, 2012 | 249 | 2012 |
Jesse GillisAssociate Professor of Integrative Physiology, University of TorontoVerified email at utoronto.ca
