Loop extrusion as a mechanism for formation of DNA damage repair foci C Arnould, V Rocher, AL Finoux, T Clouaire, K Li, F Zhou, P Caron, ... Nature 590 (7847), 660-665, 2021 | 204 | 2021 |
A Survey on Latent Tree Models and Applications. R Mourad, C Sinoquet, NL Zhang, T Liu, P Leray J. Artif. Intell. Res.(JAIR) 47, 157-203, 2013 | 96 | 2013 |
Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma I Catherine, et al. Nature Communications 6, 5965, 2015 | 80* | 2015 |
Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells R Mourad, PY Hsu, L Juan, C Shen, P Koneru, H Lin, Y Liu, K Nephew, ... PloS one 9 (12), e113354, 2014 | 61 | 2014 |
A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies R Mourad, C Sinoquet, P Leray BMC bioinformatics 12 (1), 1-20, 2011 | 47 | 2011 |
Probabilistic Graphical Models for Genetics, Genomics and Postgenomics C Sinoquet, R Mourad Oxford University Press, 2014 | 46 | 2014 |
Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation R Mourad, O Cuvier PLOS Computational Biology 12 (5), e1004908, 2016 | 44 | 2016 |
A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK R Mourad, F Chevennet, DT Dunn, E Fearnhill, V Delpech, D Asboe, ... AIDS, 2015 | 39 | 2015 |
Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution R Mourad, K Ginalski, G Legube, O Cuvier Genome Biology 19, 34, 2018 | 38 | 2018 |
Probabilistic graphical models for genetic association studies R Mourad, C Sinoquet, P Leray Briefings in bioinformatics 13 (1), 20-33, 2012 | 32 | 2012 |
DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions V Rocher, M Genais, E Nassereddine, R Mourad Plos Computational Biology 17 (8), e1009308, 2021 | 24 | 2021 |
TAD-free analysis of architectural proteins and insulators R Mourad, O Cuvier Nucleic Acids Research, 2017 | 24 | 2017 |
Learning hierarchical Bayesian networks for genome-wide association studies R Mourad, C Sinoquet, P Leray Proceedings of COMPSTAT'2010, 549-556, 2010 | 24 | 2010 |
The 3D genome: From fundamental principles to disease and cancer D Umlauf, R Mourad Seminars in Cell & Developmental Biology, 2018 | 22 | 2018 |
Chromatin compartmentalization regulates the response to DNA damage C Arnould, V Rocher, F Saur, AS Bader, F Muzzopappa, S Collins, ... Nature, 1-10, 2023 | 21 | 2023 |
Predicting the spatial organization of chromosomes using epigenetic data R Mourad, O Cuvier Genome Biology 16, 182, 2015 | 20 | 2015 |
A POLD3/BLM dependent pathway handles DSBs in transcribed chromatin upon excessive RNA:DNA hybrid accumulation S Cohen, A Guenolé, I Lazar, A Marnef, T Clouaire, DV Vernekar, N Puget, ... Nature Communications 13 (1), 1-15, 2022 | 19 | 2022 |
Visualization of Pairwise and Multilocus Linkage Disequilibrium Structure Using Latent Forests R Mourad, C Sinoquet, C Dina, P Leray PloS one 6 (12), e27320, 2011 | 10 | 2011 |
Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach R Mourad, L Li, O Cuvier PLOS Computational Biology, 2017 | 8 | 2017 |
A dynamic time order network for time-series gene expression data analysis P Zhang, R Mourad, Y Xiang, K Huang, T Huang, K Nephew, Y Liu, L Li BMC Systems Biology 6 (Suppl 3), S9, 2012 | 8 | 2012 |