|Integrative analysis of 111 reference human epigenomes|
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
|Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells|
Y Tan, B Zhang, T Wu, G Skogerb°, X Zhu, X Guo, S He, R Chen
BMC molecular biology 10 (1), 1-9, 2009
|DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape|
M Xie, C Hong, B Zhang, RF Lowdon, X Xing, D Li, X Zhou, HJ Lee, ...
Nature genetics 45 (7), 836-841, 2013
|Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm|
B Zhang, Y Zhou, N Lin, RF Lowdon, C Hong, RP Nagarajan, JB Cheng, ...
Genome research 23 (9), 1522-1540, 2013
|DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats|
D Brocks, CR Schmidt, M Daskalakis, HS Jang, NM Shah, D Li, J Li, ...
Nature genetics 49 (7), 1052-1060, 2017
|Striatal neurons directly converted from Huntington’s disease patient fibroblasts recapitulate age-associated disease phenotypes|
MB Victor, M Richner, HE Olsen, SW Lee, AM Monteys, C Ma, CJ Huh, ...
Nature neuroscience 21 (3), 341-352, 2018
|Maintenance of age in human neurons generated by microRNA-based neuronal conversion of fibroblasts|
CJ Huh, B Zhang, MB Victor, S Dahiya, LFZ Batista, S Horvath, AS Yoo
Elife 5, e18648, 2016
|Evidence of CNIH3 involvement in opioid dependence|
EC Nelson, A Agrawal, AC Heath, R Bogdan, R Sherva, B Zhang, ...
Molecular psychiatry 21 (5), 608-614, 2016
|Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation|
D Li, B Zhang, X Xing, T Wang
Methods 72, 29-40, 2015
|Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos|
HJ Lee, RF Lowdon, B Maricque, B Zhang, M Stevens, D Li, SL Johnson, ...
Nature communications 6 (1), 1-13, 2015
|Epigenomic annotation of genetic variants using the Roadmap Epigenome Browser|
X Zhou, D Li, B Zhang, RF Lowdon, NB Rockweiler, RL Sears, ...
Nature biotechnology 33 (4), 345-346, 2015
|Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers|
B Zhang, XY Xing, J Li, RF Lowdon, Y Zhou, N Lin, B Zhang, V Sundaram, ...
BMC genomics 15 (1), 868, 2014
|Recurrent epimutations activate gene body promoters in primary glioblastoma|
RP Nagarajan, B Zhang, RJA Bell, BE Johnson, AB Olshen, V Sundaram, ...
Genome research 24 (5), 761-774, 2014
|A single transcription factor is sufficient to induce and maintain secretory cell architecture|
HYG Lo, RU Jin, G Sibbel, D Liu, A Karki, MS Joens, BB Madison, ...
Genes & development 31 (2), 154-171, 2017
|The NIEHS TaRGET II Consortium and environmental epigenomics|
T Wang, EC Pehrsson, D Purushotham, D Li, X Zhuo, B Zhang, ...
Nature biotechnology 36 (3), 225-227, 2018
|Regulatory network decoded from epigenomes of surface ectoderm-derived cell types|
RF Lowdon, B Zhang, M Bilenky, T Mauro, D Li, P Gascard, ...
Nature communications 5 (1), 1-11, 2014
|Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation|
J Zhou, RL Sears, X Xing, B Zhang, D Li, NB Rockweiler, HS Jang, ...
BMC genomics 18 (1), 724, 2017
|Dnmt3a regulates T-cell development and suppresses T-ALL transformation|
AC Kramer, A Kothari, WC Wilson, H Celik, J Nikitas, C Mallaney, ...
Leukemia 31 (11), 2479-2490, 2017
|Mapping of variable DNA methylation across multiple cell types defines a dynamic regulatory landscape of the human genome|
J Gu, M Stevens, X Xing, D Li, B Zhang, JE Payton, EM Oltz, JN Jarvis, ...
G3: Genes, Genomes, Genetics 6 (4), 973-986, 2016
|Monoacylglycerol lipase (MGLL) polymorphism rs604300 interacts with childhood adversity to predict cannabis dependence symptoms and amygdala habituation: Evidence from aná…|
CE Carey, A Agrawal, B Zhang, ED Conley, L Degenhardt, AC Heath, D Li, ...
Journal of abnormal psychology 124 (4), 860, 2015