The PCNA interaction motifs revisited: thinking outside the PIP-box A Prestel, N Wichmann, JM Martins, R Marabini, N Kassem, SS Broendum, ... Cellular and Molecular Life Sciences 76, 4923-4943, 2019 | 99 | 2019 |
Biomolecular conformational changes and ligand binding: from kinetics to thermodynamics Y Wang, JM Martins, K Lindorff-Larsen Chemical Science 8 (9), 6466-6473, 2017 | 55 | 2017 |
Understanding the importance of the aromatic amino-acid residues as hot-spots IS Moreira, JM Martins, RM Ramos, PA Fernandes, MJ Ramos Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (1), 404-414, 2013 | 52 | 2013 |
DEER-PREdict: software for efficient calculation of Spin-Labeling EPR and NMR data from conformational ensembles G Tesei, JM Martins, MBA Kunze, Y Wang, R Crehuet, K Lindorff-Larsen PLOS Computational Biology 17 (1), e1008551, 2021 | 50 | 2021 |
Molecular dynamics-guided discovery of an ago-allosteric modulator for GPR40/FFAR1 M Lückmann, M Trauelsen, MA Bentsen, TAD Nissen, J Martins, Z Fallah, ... Proceedings of the National Academy of Sciences 116 (14), 7123-7128, 2019 | 42 | 2019 |
Solvent‐accessible surface area: How well can be applied to hot‐spot detection? JM Martins, RM Ramos, AC Pimenta, IS Moreira Proteins: Structure, Function, and Bioinformatics 82 (3), 479-490, 2014 | 30 | 2014 |
A New Scoring Function for Protein-Protein Docking that Identifies Native Structures with Unprecedented Accuracy IS Moreira, JM Martins, JTS Coimbra, MJ Ramos, PA Fernandes Physical Chemistry Chemical Physics, 2014 | 22 | 2014 |
A robust proton flux (pHlux) assay for studying the function and inhibition of the influenza a M2 proton channel P Santner, JMS Martins, JS Laursen, L Behrendt, L Riber, CA Olsen, ... Biochemistry 57 (41), 5949-5956, 2018 | 18 | 2018 |
Are hot-spots occluded from water? IS Moreira, RM Ramos, JM Martins, PA Fernandes, MJ Ramos Journal of Biomolecular Structure and Dynamics 32 (2), 186-197, 2014 | 14 | 2014 |
A context-dependent and disordered ubiquitin-binding motif JE Dreier, A Prestel, JM Martins, SS Brųndum, O Nielsen, AE Garbers, ... Cellular and Molecular Life Sciences 79 (9), 484, 2022 | 13 | 2022 |
Dynamic structure of NGF and proNGF complexed with p75NTR: pro-peptide effect AC Pimenta, DFAR Dourado, JM Martins, A Melo, ... Journal of chemical information and modeling 54 (7), 2051-2067, 2014 | 13 | 2014 |
Random mutagenesis analysis of the influenza A M2 proton channel reveals novel resistance mutants P Santner, JMS Martins, C Kampmeyer, R Hartmann-Petersen, ... Biochemistry 57 (41), 5957-5968, 2018 | 11 | 2018 |
FRETpredict: a Python package for FRET efficiency predictions using rotamer libraries D Montepietra, G Tesei, JM Martins, MBA Kunze, RB Best, ... Communications Biology 7 (1), 298, 2024 | 8 | 2024 |
Ligand-Induced Structural Changes in TEM-1 Probed by Molecular Dynamics and Relative Binding Free Energy Calculations AC Pimenta, JM Martins, R Fernandes, IS Moreira Journal of chemical information and modeling 53 (10), 2648-2658, 2013 | 8 | 2013 |
Structural determinats of a typical leucine-rich repeat protein J Martins, R Ramos, I Moreira Commun. Comput. Phys, 2012 | 6 | 2012 |
Context Matters in Disorder Based Protein Communication BB Kragelund, A Prestel, N Wickmann, J Martins, W Boomsma, L Staby, ... Biophysical Journal 118 (3), 491a, 2020 | | 2020 |
Computational Studies of Drug Resistance: Investigating Binding Affinities and Structural Ensembles of Proteins JM Martins University of Copenhagen, Faculty of Science [Department of Biology], 2017 | | 2017 |