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Jean M Macklaim, PhD
Jean M Macklaim, PhD
Unknown affiliation
Verified email at uwo.ca
Title
Cited by
Cited by
Year
Microbiome datasets are compositional: and this is not optional
GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue
Frontiers in microbiology 8, 2224, 2017
13712017
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
AD Fernandes, JN Reid, JM Macklaim, TA McMurrough, DR Edgell, ...
Microbiome 2 (1), 1-13, 2014
6442014
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
AD Fernandes, JM Macklaim, TG Linn, G Reid, GB Gloor
PloS one 8 (7), e67019, 2013
3892013
Microbiota of human breast tissue
C Urbaniak, J Cummins, M Brackstone, JM Macklaim, GB Gloor, ...
Applied and environmental microbiology 80 (10), 3007-3014, 2014
3682014
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products
GB Gloor, R Hummelen, JM Macklaim, RJ Dickson, AD Fernandes, ...
PLoS One 5 (10), e15406, 2010
3272010
Deep sequencing of the vaginal microbiota of women with HIV
R Hummelen, AD Fernandes, JM Macklaim, RJ Dickson, J Changalucha, ...
PloS one 5 (8), e12078, 2010
3022010
Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis
JM Macklaim, AD Fernandes, JM Di Bella, JA Hammond, G Reid, ...
Microbiome 1 (1), 1-11, 2013
2872013
At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
JM Macklaim, GB Gloor, KC Anukam, S Cribby, G Reid
Proceedings of the National Academy of Sciences 108 (supplement_1), 4688-4695, 2011
2442011
Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness
R Hummelen, JM Macklaim, JE Bisanz, JA Hammond, A McMillan, ...
PloS one 6 (11), e26602, 2011
1882011
Changes in vaginal microbiota following antimicrobial and probiotic therapy
JM Macklaim, JC Clemente, R Knight, GB Gloor, G Reid
Microbial ecology in health and disease 26 (1), 27799, 2015
1412015
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women
A McMillan, S Rulisa, M Sumarah, JM Macklaim, J Renaud, JE Bisanz, ...
Scientific reports 5 (1), 1-14, 2015
1062015
Microbiome datasets are compositional: and this is not optional. Front Microbiol 8: 2224
GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue
942017
Microbiota at multiple body sites during pregnancy in a rural Tanzanian population and effects of Moringa-supplemented probiotic yogurt
JE Bisanz, MK Enos, G PrayGod, S Seney, JM Macklaim, S Chilton, ...
Applied and environmental microbiology 81 (15), 4965-4975, 2015
862015
Persistence of the Oral Probiotic Streptococcus salivarius M18 Is Dose Dependent and Megaplasmid Transfer Can Augment Their Bacteriocin Production and …
JP Burton, PA Wescombe, JM Macklaim, MHC Chai, K MacDonald, ...
PloS one 8 (6), e65991, 2013
802013
Displaying variation in large datasets: plotting a visual summary of effect sizes
GB Gloor, JM Macklaim, AD Fernandes
Journal of Computational and Graphical Statistics 25 (3), 971-979, 2016
742016
Adhesion of Lactobacillus iners AB-1 to Human Fibronectin: A Key Mediator for Persistence in the Vagina?
A McMillan, JM Macklaim, JP Burton, G Reid
Reproductive Sciences 20 (7), 791-796, 2013
692013
Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman
KC Anukam, JM Macklaim, GB Gloor, G Reid, J Boekhorst, B Renckens, ...
PloS one 8 (3), e59239, 2013
662013
Responders and non-responders to probiotic interventions: How can we improve the odds?
G Reid, E Gaudier, F Guarner, GB Huffnagle, JM Macklaim, AM Munoz, ...
Gut Microbes 1 (3), 200, 2010
632010
Subinhibitory antibiotic therapy alters recurrent urinary tract infection pathogenesis through modulation of bacterial virulence and host immunity
LW Goneau, TJ Hannan, RA MacPhee, DJ Schwartz, JM Macklaim, ...
MBio 6 (2), e00356-15, 2015
602015
Compositional uncertainty should not be ignored in high-throughput sequencing data analysis
GB Gloor, JM Macklaim, M Vu, AD Fernandes
Austrian Journal of Statistics 45 (4), 73-87, 2016
532016
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