Jean M Macklaim, PhD
Jean M Macklaim, PhD
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Cited by
Microbiome datasets are compositional: and this is not optional
GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue
Frontiers in microbiology 8, 2224, 2017
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
AD Fernandes, JN Reid, JM Macklaim, TA McMurrough, DR Edgell, ...
Microbiome 2 (1), 1-13, 2014
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
AD Fernandes, JM Macklaim, TG Linn, G Reid, GB Gloor
PloS one 8 (7), e67019, 2013
Microbiota of human breast tissue
C Urbaniak, J Cummins, M Brackstone, JM Macklaim, GB Gloor, ...
Applied and environmental microbiology 80 (10), 3007-3014, 2014
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products
GB Gloor, R Hummelen, JM Macklaim, RJ Dickson, AD Fernandes, ...
PLoS One 5 (10), e15406, 2010
Deep sequencing of the vaginal microbiota of women with HIV
R Hummelen, AD Fernandes, JM Macklaim, RJ Dickson, J Changalucha, ...
PloS one 5 (8), e12078, 2010
Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis
JM Macklaim, AD Fernandes, JM Di Bella, JA Hammond, G Reid, ...
Microbiome 1 (1), 1-11, 2013
At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
JM Macklaim, GB Gloor, KC Anukam, S Cribby, G Reid
Proceedings of the National Academy of Sciences 108 (supplement_1), 4688-4695, 2011
Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness
R Hummelen, JM Macklaim, JE Bisanz, JA Hammond, A McMillan, ...
PloS one 6 (11), e26602, 2011
Changes in vaginal microbiota following antimicrobial and probiotic therapy
JM Macklaim, JC Clemente, R Knight, GB Gloor, G Reid
Microbial ecology in health and disease 26 (1), 27799, 2015
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women
A McMillan, S Rulisa, M Sumarah, JM Macklaim, J Renaud, JE Bisanz, ...
Scientific reports 5 (1), 1-14, 2015
Microbiome datasets are compositional: and this is not optional. Front Microbiol 8: 2224
GB Gloor, JM Macklaim, V Pawlowsky-Glahn, JJ Egozcue
Microbiota at multiple body sites during pregnancy in a rural Tanzanian population and effects of Moringa-supplemented probiotic yogurt
JE Bisanz, MK Enos, G PrayGod, S Seney, JM Macklaim, S Chilton, ...
Applied and environmental microbiology 81 (15), 4965-4975, 2015
Persistence of the Oral Probiotic Streptococcus salivarius M18 Is Dose Dependent and Megaplasmid Transfer Can Augment Their Bacteriocin Production and …
JP Burton, PA Wescombe, JM Macklaim, MHC Chai, K MacDonald, ...
PloS one 8 (6), e65991, 2013
Displaying variation in large datasets: plotting a visual summary of effect sizes
GB Gloor, JM Macklaim, AD Fernandes
Journal of Computational and Graphical Statistics 25 (3), 971-979, 2016
Adhesion of Lactobacillus iners AB-1 to Human Fibronectin: A Key Mediator for Persistence in the Vagina?
A McMillan, JM Macklaim, JP Burton, G Reid
Reproductive Sciences 20 (7), 791-796, 2013
Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman
KC Anukam, JM Macklaim, GB Gloor, G Reid, J Boekhorst, B Renckens, ...
PloS one 8 (3), e59239, 2013
Responders and non-responders to probiotic interventions: How can we improve the odds?
G Reid, E Gaudier, F Guarner, GB Huffnagle, JM Macklaim, AM Munoz, ...
Gut Microbes 1 (3), 200, 2010
Subinhibitory antibiotic therapy alters recurrent urinary tract infection pathogenesis through modulation of bacterial virulence and host immunity
LW Goneau, TJ Hannan, RA MacPhee, DJ Schwartz, JM Macklaim, ...
MBio 6 (2), e00356-15, 2015
Compositional uncertainty should not be ignored in high-throughput sequencing data analysis
GB Gloor, JM Macklaim, M Vu, AD Fernandes
Austrian Journal of Statistics 45 (4), 73-87, 2016
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