Yiwen Chen
Yiwen Chen
Assistant Professor at University of Texas MD Anderson Cancer Center
Verified email at mdanderson.org
TitleCited byYear
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
10982012
Cistrome: an integrative platform for transcriptional regulation studies
T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ...
Genome biology 12 (8), R83, 2011
4372011
XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway
X Chen, D Iliopoulos, Q Zhang, Q Tang, MB Greenblatt, M Hatziapostolou, ...
Nature 508 (7494), 103, 2014
4192014
REST and stress resistance in ageing and Alzheimer’s disease
T Lu, L Aron, J Zullo, Y Pan, H Kim, Y Chen, TH Yang, HM Kim, D Drake, ...
Nature 507 (7493), 448, 2014
3832014
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
Z Du, T Fei, RGW Verhaak, Z Su, Y Zhang, M Brown, Y Chen, XS Liu
Nature structural & molecular biology 20 (7), 908, 2013
3472013
Targeting androgen receptor in estrogen receptor-negative breast cancer
M Ni, Y Chen, E Lim, H Wimberly, ST Bailey, Y Imai, DL Rimm, XS Liu, ...
Cancer cell 20 (1), 119-131, 2011
2792011
Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation
CL Hsieh, T Fei, Y Chen, T Li, Y Gao, X Wang, T Sun, CJ Sweeney, ...
Proceedings of the National Academy of Sciences 111 (20), 7319-7324, 2014
1692014
Systematic evaluation of factors influencing ChIP-seq fidelity
Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ...
Nature methods 9 (6), 609, 2012
1482012
Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer
Z Du, T Sun, E Hacisuleyman, T Fei, X Wang, M Brown, JL Rinn, MGS Lee, ...
Nature communications 7, 10982, 2016
1292016
A comprehensive view of nuclear receptor cancer cistromes
Q Tang, Y Chen, C Meyer, T Geistlinger, M Lupien, Q Wang, T Liu, ...
Cancer research 71 (22), 6940-6947, 2011
1062011
Protein folding: then and now
Y Chen, F Ding, H Nie, AW Serohijos, S Sharma, KC Wilcox, S Yin, ...
Archives of biochemistry and biophysics 469 (1), 4-19, 2008
1042008
Amplitude modulation of androgen signaling by c-MYC
M Ni, Y Chen, T Fei, D Li, E Lim, XS Liu, M Brown
Genes & development 27 (7), 734-748, 2013
682013
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
RDS Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, ...
Structure 12 (12), 2161-2171, 2004
682004
Deciphering protein dynamics from NMR data using explicit structure sampling and selection
Y Chen, SL Campbell, NV Dokholyan
Biophysical journal 93 (7), 2300-2306, 2007
652007
The coordinated evolution of yeast proteins is constrained by functional modularity
Y Chen, NV Dokholyan
TRENDS in Genetics 22 (8), 416-419, 2006
612006
BiPS, a photocleavable, isotopically coded, fluorescent cross-linker for structural proteomics
EV Petrotchenko, K Xiao, J Cable, Y Chen, NV Dokholyan, CH Borchers
Molecular & Cellular Proteomics 8 (2), 273-286, 2009
602009
A single disulfide bond differentiates aggregation pathways of ss2-microglobulin
Y Chen, NV Dokholyan
Journal of molecular biology 354 (2), 473-482, 2005
572005
Natural selection against protein aggregation on self-interacting and essential proteins in yeast, fly, and worm
Y Chen, NV Dokholyan
Molecular biology and evolution 25 (8), 1530-1533, 2008
522008
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
T Fei, Y Chen, T Xiao, W Li, L Cato, P Zhang, MB Cotter, M Bowden, ...
Proceedings of the National Academy of Sciences 114 (26), E5207-E5215, 2017
512017
Capturing the interactome of newly transcribed RNA
X Bao, X Guo, M Yin, M Tariq, Y Lai, S Kanwal, J Zhou, N Li, Y Lv, ...
Nature methods 15 (3), 213, 2018
432018
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