Anna Goldenberg - Google Scholar Citations

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	All	Since 2015
Citations	3665	2936
h-index	22	19
i10-index	38	31

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Co-authors

Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkVerified email at uhnresearch.ca
Petr SmirnovGraduate Student at Department of Medical Biophysics, University of TorontoVerified email at mail.utoronto.ca
Bo WangLead AI Scientist, PMCC UHN; CIFAR AI Chair, Vector Institute; Assistant Professor, U of TorontoVerified email at vectorinstitute.ai
Stephen E Fienberg 1942-2016Maurice Falk University Professor of Statistics and Social ScienceVerified email at cs.cmu.edu
Michael BrudnoProfessor of Computer Science, University of Toronto; Director, Centre for Computaitonal MedicineVerified email at cs.toronto.edu
Marc FiumeUniversity of TorontoVerified email at cs.toronto.edu
Andrew MooreDean, School of Computer Science, Carnegie MellonVerified email at cs.cmu.edu
Edoardo M AiroldiProfessor of Statistics & Data Science, Temple University & PI, Harvard UniversityVerified email at fas.harvard.edu
John QuackenbushHarvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-FarberVerified email at hsph.harvard.edu
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Zhuowen TuProfessor, Cognitive Science, Computer Science&Engineering, UC San DiegoVerified email at ucsd.edu
sara mostafaviUniversity of British ColumbiaVerified email at stat.ubc.ca
Sohrab ShahMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Galit ShmueliDistinguished Professor, National Tsing Hua UniversityVerified email at iss.nthu.edu.tw
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Zhaolei Zhang, ProfessorUniversity of Toronto, Donnelly Centre, Dept of Molecular Genetics, Dept of Computer ScienceVerified email at utoronto.ca
Yue LiMcGill UniversityVerified email at cs.mcgill.ca
David BleiProfessor of Statistics and Computer Science, Columbia UniversityVerified email at columbia.edu
Mohammed AlshalalfaBioinformatician and Genomic AnalystVerified email at ucalgary.ca
Amit DeshwarUniversity of TorontoVerified email at utoronto.ca

Anna Goldenberg

Scientist, SickKids Research Institute; Assistant Professor Department of Computer Science, University of Toronto

Verified email at utoronto.ca - Homepage

machine learning computational biology network modeling disease heterogeneity data integration


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A survey of statistical network models A Goldenberg, AX Zheng, SE Fienberg, EM Airoldi Foundations and Trends® in Machine Learning 2 (2), 129-233, 2010	774	2010
Similarity network fusion for aggregating data types on a genomic scale B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ... Nature methods 11 (3), 333, 2014	632	2014
Integrated genomic characterization of pancreatic ductal adenocarcinoma BJ Raphael, RH Hruban, AJ Aguirre, RA Moffitt, JJ Yeh, C Stewart, ... Cancer cell 32 (2), 185-203. e13, 2017	352	2017
Intertumoral heterogeneity within medulloblastoma subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer cell 31 (6), 737-754. e6, 2017	288	2017
Early statistical detection of anthrax outbreaks by tracking over-the-counter medication sales A Goldenberg, G Shmueli, RA Caruana, SE Fienberg Proceedings of the National Academy of Sciences 99 (8), 5237-5240, 2002	255	2002
Tensorflow: Biology’s gateway to deep learning? L Rampasek, A Goldenberg Cell systems 2 (1), 12-14, 2016	134	2016
iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data AM Mezlini, EJM Smith, M Fiume, O Buske, GL Savich, S Shah, S Aparicio, ... Genome research 23 (3), 519-529, 2013	119	2013
Sensitive tumour detection and classification using plasma cell-free DNA methylomes SY Shen, R Singhania, G Fehringer, A Chakravarthy, MHA Roehrl, ... Nature 563 (7732), 579-583, 2018	99	2018
PharmacoGx: an R package for analysis of large pharmacogenomic datasets P Smirnov, Z Safikhani, N El-Hachem, D Wang, A She, C Olsen, ... Bioinformatics 32 (8), 1244-1246, 2016	93	2016
Tractable learning of large Bayes net structures from sparse data A Goldenberg, A Moore Proceedings of the twenty-first international conference on Machine learning, 44, 2004	74	2004
Subtyping: What it is and its role in precision medicine S Saria, A Goldenberg IEEE Intelligent Systems 30 (4), 70-75, 2015	62	2015
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ... Nature communications 7 (1), 1-10, 2016	61	2016
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman Information Fusion 50, 71-91, 2019	59	2019
A comparison of statistical and machine learning algorithms on the task of link completion A Goldenberg, J Kubica, P Komarek, A Moore, J Schneider KDD Workshop on Link Analysis for Detecting Complex Behavior, 8, 2003	47	2003
A comparison of statistical and machine learning algorithms on the task of link completion A Goldenberg, J Kubica, P Komarek, A Moore, J Schneider KDD Workshop on Link Analysis for Detecting Complex Behavior, 8, 2003	47	2003
Revisiting inconsistency in large pharmacogenomic studies Z Safikhani, P Smirnov, M Freeman, N El-Hachem, A She, Q Rene, ... F1000Research 5, 2016	42	2016
A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information Y Li, A Goldenberg, KC Wong, Z Zhang Bioinformatics 30 (5), 621-628, 2014	35	2014
Do no harm: a roadmap for responsible machine learning for health care J Wiens, S Saria, M Sendak, M Ghassemi, VX Liu, F Doshi-Velez, K Jung, ... Nature medicine 25 (9), 1337-1340, 2019	29	2019
Bayes net graphs to understand co-authorship networks? A Goldenberg, AW Moore Proceedings of the 3rd international workshop on Link discovery, 1-8, 2005	28	2005
Sex-specific regulation of weight and puberty by the Lin28/let-7 axis C Corre, G Shinoda, H Zhu, DL Cousminer, C Crossman, C Bellissimo, ... The Journal of endocrinology 228 (3), 179, 2016	26	2016

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