Robert Zinzen
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Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ...
Nature genetics 44 (2), 148-156, 2012
Combinatorial binding predicts spatio-temporal cis-regulatory activity
RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong
Nature 462 (7269), 65-70, 2009
The Drosophila embryo at single-cell transcriptome resolution
N Karaiskos, P Wahle, J Alles, A Boltengagen, S Ayoub, C Kipar, C Kocks, ...
Science 358 (6360), 194-199, 2017
Whole-genome ChIP–chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo
J Zeitlinger, RP Zinzen, A Stark, M Kellis, H Zhang, RA Young, M Levine
Genes & development 21 (4), 385-390, 2007
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ...
Science 375 (6584), eabk2432, 2022
Cell fixation and preservation for droplet-based single-cell transcriptomics
J Alles, N Karaiskos, SD Praktiknjo, S Grosswendt, P Wahle, PL Ruffault, ...
BMC biology 15 (1), 1-14, 2017
Computational models for neurogenic gene expression in the Drosophila embryo
RP Zinzen, K Senger, M Levine, D Papatsenko
Current Biology 16 (13), 1358-1365, 2006
A regulatory code for neurogenic gene expression in the Drosophila embryo
M Markstein, R Zinzen, P Markstein, KP Yee, A Erives, A Stathopoulos, ...
Oxford University Press for The Company of Biologists Limited 131 (10), 2387…, 2004
Spatial regulation of microRNA gene expression in the Drosophila embryo
F Biemar, R Zinzen, M Ronshaugen, V Sementchenko, JR Manak, ...
Proceedings of the National Academy of Sciences 102 (44), 15907-15911, 2005
Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP
S Bonn, RP Zinzen, A Perez-Gonzalez, A Riddell, AC Gavin, EEM Furlong
Nature Protocols 7 (5), 978-994, 2012
Oxidative metabolism drives immortalization of neural stem cells during tumorigenesis
F Bonnay, A Veloso, V Steinmann, T Kcher, MD Abdusselamoglu, ...
Cell 182 (6), 1490-1507. e19, 2020
Dorsal-ventral pattern of Delta trafficking is established by a Snail-Tom-Neuralized pathway
S De Renzis, J Yu, R Zinzen, E Wieschaus
Developmental cell 10 (2), 257-264, 2006
Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae
Y Goltsev, N Fuse, M Frasch, RP Zinzen, G Lanzaro, M Levine
Development 134 (13), 2415-2424, 2007
A conserved role for Snail as a potentiator of active transcription
M Rembold, L Ciglar, JO Yez-Cuna, RP Zinzen, C Girardot, A Jain, ...
Genes & development 28 (2), 167-181, 2014
Evolution of the ventral midline in insect embryos
RP Zinzen, J Cande, M Ronshaugen, D Papatsenko, M Levine
Developmental cell 11 (6), 895-902, 2006
miR-184 regulates pancreatic β-cell function according to glucose metabolism
SG Tattikota, T Rathjen, J Hausser, A Khedkar, UD Kabra, V Pandey, ...
Journal of Biological Chemistry 290 (33), 20284-20294, 2015
Enhancer responses to similarly distributed antagonistic gradients in development
RP Zinzen, D Papatsenko
PLoS computational biology 3 (5), e84, 2007
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
D Hafez, A Karabacak, S Krueger, YC Hwang, LS Wang, RP Zinzen, ...
Genome biology 18 (1), 1-21, 2017
Determinants of promoter and enhancer transcription directionality in metazoans
MM Ibrahim, A Karabacak, A Glahs, E Kolundzic, A Hirsekorn, A Carda, ...
Nature communications 9 (1), 4472, 2018
A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs
AL McCorkindale, P Wahle, S Werner, I Jungreis, P Menzel, CJ Shukla, ...
Development 146 (6), dev175265, 2019
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