James Schnable
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Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
JC Schnable, NM Springer, M Freeling
Proceedings of the National Academy of Sciences 108 (10), 4069-4074, 2011
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs
MR Woodhouse, JC Schnable, BS Pedersen, E Lyons, D Lisch, ...
PLoS Biol 8 (6), e1000409, 2010
Integration of omic networks in a developmental atlas of maize
JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu, MA Urich, JR Nery, ...
Science 353 (6301), 814-818, 2016
ALLMAPS: robust scaffold ordering based on multiple maps
H Tang, X Zhang, C Miao, J Zhang, R Ming, JC Schnable, PS Schnable, ...
Genome biology 16 (1), 3, 2015
High-resolution mapping of open chromatin in the rice genome
W Zhang, Y Wu, JC Schnable, Z Zeng, M Freeling, GE Crawford, J Jiang
Genome research 22 (1), 151-162, 2012
Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants
M Freeling, MR Woodhouse, S Subramaniam, G Turco, D Lisch, ...
Current opinion in plant biology 15 (2), 131-139, 2012
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
H Tang, MR Woodhouse, F Cheng, JC Schnable, BS Pedersen, G Conant, ...
Genetics 190 (4), 1563-1574, 2012
Heritable epigenetic variation among maize inbreds
SR Eichten, RA Swanson-Wagner, JC Schnable, AJ Waters, ...
PLoS Genet 7 (11), e1002372, 2011
Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
JC Schnable, M Freeling
PloS one 6 (3), e17855, 2011
Two evolutionarily distinct classes of paleopolyploidy
O Garsmeur, JC Schnable, A Almeida, C Jourda, A D’Hont, M Freeling
Molecular biology and evolution 31 (2), 448-454, 2014
Temporal dynamics of maize plant growth, water use, and leaf water content using automated high throughput RGB and hyperspectral imaging
Y Ge, G Bai, V Stoerger, JC Schnable
Computers and Electronics in Agriculture 127, 625-632, 2016
Genome-wide analysis of syntenic gene deletion in the grasses
JC Schnable, M Freeling, E Lyons
Genome biology and evolution 4 (3), 265-277, 2012
Screening synteny blocks in pairwise genome comparisons through integer programming
H Tang, E Lyons, B Pedersen, JC Schnable, AH Paterson, M Freeling
BMC bioinformatics 12 (1), 1-11, 2011
High throughput in vivo analysis of plant leaf chemical properties using hyperspectral imaging
P Pandey, Y Ge, V Stoerger, JC Schnable
Frontiers in plant science 8, 1348, 2017
Initiation of Setaria as a model plant
D Xianmin, J Schnable, JL Bennetzen, LI Jiayang
Frontiers of Agricultural Science and Engineering 1 (1), 16-20, 2014
Escape from preferential retention following repeated whole genome duplications in plants
JC Schnable, X Wang, JC Pires, M Freeling
Frontiers in plant science 3, 94, 2012
tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci
A Ott, S Liu, JC Schnable, CTE Yeh, KS Wang, PS Schnable
Nucleic acids research 45 (21), e178-e178, 2017
Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa
F Cheng, C Sun, J Wu, J Schnable, MR Woodhouse, J Liang, C Cai, ...
New Phytologist 211 (1), 288-299, 2016
Mapping of quantitative trait locus (QTLs) that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica× Setaria viridis
L Qie, G Jia, W Zhang, J Schnable, Z Shang, W Li, B Liu, M Li, Y Chai, ...
PloS one 9 (7), e101868, 2014
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