James Schnable
TitleCited byYear
Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
13892010
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
JC Schnable, NM Springer, M Freeling
Proceedings of the National Academy of Sciences 108 (10), 4069-4074, 2011
4332011
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.
MR Woodhouse, JC Schnable, BS Pedersen, E Lyons, D Lisch, ...
PLoS biology 8 (6), e1000409-e1000409, 2010
2172010
High-resolution mapping of open chromatin in the rice genome
W Zhang, Y Wu, JC Schnable, Z Zeng, M Freeling, GE Crawford, J Jiang
Genome research 22 (1), 151-162, 2012
1472012
ALLMAPS: robust scaffold ordering based on multiple maps
H Tang, X Zhang, C Miao, J Zhang, R Ming, JC Schnable, PS Schnable, ...
Genome biology 16 (1), 3, 2015
1462015
Heritable epigenetic variation among maize inbreds
SR Eichten, RA Swanson-Wagner, JC Schnable, AJ Waters, ...
PLoS Genetics 7 (11), 2011
1382011
Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants
M Freeling, MR Woodhouse, S Subramaniam, G Turco, D Lisch, ...
Current opinion in plant biology 15 (2), 131-139, 2012
1372012
Integration of omic networks in a developmental atlas of maize
JW Walley, RC Sartor, Z Shen, RJ Schmitz, KJ Wu, MA Urich, JR Nery, ...
Science 353 (6301), 814-818, 2016
1312016
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
H Tang, MR Woodhouse, F Cheng, JC Schnable, BS Pedersen, G Conant, ...
Genetics 190 (4), 1563-1574, 2012
1312012
Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
JC Schnable, M Freeling
PloS one 6 (3), 2011
1252011
Genome-wide analysis of syntenic gene deletion in the grasses
JC Schnable, M Freeling, E Lyons
Genome biology and evolution 4 (3), 265-277, 2012
1182012
Two evolutionarily distinct classes of paleopolyploidy
O Garsmeur, JC Schnable, A Almeida, C Jourda, A D’Hont, M Freeling
Molecular biology and evolution 31 (2), 448-454, 2014
1122014
Screening synteny blocks in pairwise genome comparisons through integer programming
H Tang, E Lyons, B Pedersen, JC Schnable, AH Paterson, M Freeling
BMC bioinformatics 12 (1), 102, 2011
922011
Temporal dynamics of maize plant growth, water use, and leaf water content using automated high throughput RGB and hyperspectral imaging
Y Ge, G Bai, V Stoerger, JC Schnable
Computers and Electronics in Agriculture 127, 625-632, 2016
752016
High throughput in vivo analysis of plant leaf chemical properties using hyperspectral imaging
P Pandey, Y Ge, V Stoerger, JC Schnable
Frontiers in plant science 8, 1348, 2017
572017
Initiation of Setaria as a model plant
D Xianmin, J Schnable, JL Bennetzen, LI Jiayang
Frontiers of Agricultural Science and Engineering 1 (1), 16-20, 2014
562014
Escape from preferential retention following repeated whole genome duplications in plants
JC Schnable, X Wang, JC Pires, M Freeling
Frontiers in plant science 3, 94, 2012
562012
Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids
A Paschold, NB Larson, C Marcon, JC Schnable, CT Yeh, C Lanz, ...
The Plant Cell 26 (10), 3939-3948, 2014
402014
Mapping of quantitative trait locus (QTLs) that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica× Setaria viridis
L Qie, G Jia, W Zhang, J Schnable, Z Shang, W Li, B Liu, M Li, Y Chai, ...
PloS one 9 (7), 2014
392014
Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention Through Multiple Tetraploidies in the Grasses
JC Schnable, BS Pedersen, S Subramaniam, M Freeling
Frontiers in Plant Genetics And Genomics 2, 2011
382011
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Articles 1–20