Salem Malikic
Salem Malikic
Staff Scientist, Cancer Data Science Lab, National Cancer Institute
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
3692020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
2592020
Clonality inference in multiple tumor samples using phylogeny
S Malikic, AW McPherson, N Donmez, CS Sahinalp
Bioinformatics 31 (9), 1349-1356, 2015
1462015
Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data
S Malikic, K Jahn, J Kuipers, SC Sahinalp, N Beerenwinkel
Nature communications 10 (1), 1-12, 2019
582019
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ...
Genome research 29 (11), 1860-1877, 2019
422019
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
302018
Clonality inference from single tumor samples using low coverage sequence data
N Donmez, S Malikic, AW Wyatt, ME Gleave, CC Collins, SC Sahinalp
International Conference on Research in Computational Molecular Biology, 83-94, 2016
292016
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data
I Numanagić, S Malikić, VM Pratt, TC Skaar, DA Flockhart, SC Sahinalp
Bioinformatics 31 (12), i27-i34, 2015
272015
A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression
N Karpov, S Malikic, MK Rahman, SC Sahinalp
Algorithms for Molecular Biology 14 (1), 1-18, 2019
20*2019
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
I Numanagić, S Malikić, M Ford, X Qin, L Toji, M Radovich, TC Skaar, ...
Nature communications 9 (1), 1-11, 2018
192018
Phiscs-bnb: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem
E Sadeqi Azer, F Rashidi Mehrabadi, S Malikić, XC Li, O Bartok, ...
Bioinformatics 36 (Supplement_1), i169-i176, 2020
8*2020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell, 2021
52021
Collaborative intra-tumor heterogeneity detection
S Khakabimamaghani, S Malikic, J Tang, D Ding, R Morin, ...
Bioinformatics 35 (14), i379-i388, 2019
52019
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13 Supplement), 3000-3000, 2018
52018
Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data. bioRxiv
S Malikic, K Jahn, J Kuipers, C Sahinalp, N Beerenwinkel
December, 2017
52017
Identification of conserved evolutionary trajectories in tumors
E Hodzic, R Shrestha, S Malikic, CC Collins, K Litchfield, S Turajlic, ...
Bioinformatics 36 (Supplement_1), i427-i435, 2020
32020
Tumor Phylogeny Topology Inference via Deep Learning
ES Azer, MH Ebrahimabadi, S Malikić, R Khardon, SC Sahinalp
Iscience 23 (11), 101655, 2020
22020
Studying the history of tumor evolution from single-cell sequencing data by exploring the space of binary matrices
S Malikic, FR Mehrabadi, ES Azer, MH Ebrahimabadi, SC Sahinalp
bioRxiv, 2020
12020
Inference of tumor subclonal composition and evolution by the use of single-cell and bulk DNA sequencing data
S Malikic
Applied Sciences: School of Computing Science, 2019
12019
Leibniz International Proceedings in Informatics (LIPIcs)
N Karpov, S Malikic, MK Rahman, SC Sahinalp
12018
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Articles 1–20