Erik Garrison
TitleCited byYear
A map of human genome variation from population-scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
66732010
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
60652012
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
47672015
Haplotype-based variant detection from short-read sequencing
E Garrison, G Marth
arXiv preprint arXiv:1207.3907, 2012
12392012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75, 2015
9782015
Demographic history and rare allele sharing among human populations
S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ...
Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011
4542011
BamTools: a C++ API and toolkit for analyzing and managing BAM files
DW Barnett, EK Garrison, AR Quinlan, MP Strömberg, GT Marth
Bioinformatics 27 (12), 1691-1692, 2011
3692011
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
3132013
MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping
WP Lee, MP Stromberg, A Ward, C Stewart, EP Garrison, GT Marth
PloS one 9 (3), e90581, 2014
2472014
A comprehensive map of mobile element insertion polymorphisms in humans
C Stewart, D Kural, MP Strömberg, JA Walker, MK Konkel, AM Stütz, ...
PLoS genetics 7 (8), e1002236, 2011
2252011
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini, GA McVean, P Donnelly, G Lunter, JL Marchini, ...
Nature communications 5, 3934, 2014
2062014
Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences
GD Poznik, Y Xue, FL Mendez, TF Willems, A Massaia, MAW Sayres, ...
Nature genetics 48 (6), 593, 2016
1702016
SpeedSeq: ultra-fast personal genome analysis and interpretation
C Chiang, RM Layer, GG Faust, MR Lindberg, DB Rose, EP Garrison, ...
Nature methods 12 (10), 966, 2015
1582015
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
M Zhao, WP Lee, EP Garrison, GT Marth
PloS one 8 (12), e82138, 2013
1232013
Genome graphs and the evolution of genome inference
B Paten, AM Novak, JM Eizenga, E Garrison
Genome research 27 (5), 665-676, 2017
1072017
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2016
1032016
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology, 2018
842018
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences
V Colonna, Q Ayub, Y Chen, L Pagani, P Luisi, M Pybus, E Garrison, ...
Genome biology 15 (6), R88, 2014
622014
A graph extension of the positional Burrows–Wheeler transform and its applications
AM Novak, E Garrison, B Paten
Algorithms for Molecular Biology 12 (1), 18, 2017
302017
Vcflib: A C++ library for parsing and manipulating VCF files
E Garrison
GitHub https://github. com/ekg/vcflib, 2012
232012
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Articles 1–20