| A new distance for high level RNA secondary structure comparison J Allali, MF Sagot IEEE/ACM transactions on computational biology and bioinformatics 2 (1), 3-14, 2005 | 73 | 2005 |
| The at most k-deep factor tree J Allali, MF Sagot Submitted for publi, 2004 | 33 | 2004 |
| Improvements of alignment algorithms for polyphonic music retrieval P Hanna, M Robine, P Ferraro, J Allali Computer Music Modeling and Retrieval 2008, 244-251, 2008 | 26 | 2008 |
| Adaptation of string matching algorithms for identification of near-duplicate music documents M Robine, P Hanna, P Ferraro, J Allali Workshop on plagiarism analysis, authorship identification, and near …, 2007 | 25 | 2007 |
| Local transpositions in alignment of polyphonic musical sequences J Allali, P Ferraro, P Hanna, C Iliopoulos International Symposium on String Processing and Information Retrieval, 26-38, 2007 | 24 | 2007 |
| Novel tree edit operations for RNA secondary structure comparison J Allali, MF Sagot International Workshop on Algorithms in Bioinformatics, 412-425, 2004 | 23 | 2004 |
| A multiple layer model to compare RNA secondary structures J Allali, MF Sagot Software: Practice and Experience 38 (8), 775-792, 2008 | 20 | 2008 |
| Rhoban football club: Robocup humanoid kid-size 2016 champion team paper J Allali, L Deguillaume, R Fabre, L Gondry, L Hofer, O Ly, S N’Guyen, ... Robot World Cup, 491-502, 2016 | 18 | 2016 |
| BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms J Allali, C Saule, C Chauve, Y d’Aubenton-Carafa, A Denise, C Drevet, ... Advances in bioinformatics 2012, 2012 | 16 | 2012 |
| BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms J Allali, C Saule, C Chauve, Y d’Aubenton-Carafa, A Denise, C Drevet, ... Advances in bioinformatics 2012, 2012 | 16 | 2012 |
| A multiple graph layers model with application to RNA secondary structures comparison J Allali, MF Sagot International Symposium on String Processing and Information Retrieval, 348-359, 2005 | 12 | 2005 |
| Polyphonic alignment algorithms for symbolic music retrieval J Allali, P Ferraro, P Hanna, M Robine Auditory Display, 466-482, 2009 | 10 | 2009 |
| Toward a general framework for polyphonic comparison J Allali, P Ferraro, P Hanna, C Iliopoulos, M Robine Fundamenta Informaticae 97 (3), 331-346, 2009 | 10 | 2009 |
| Benchmarking RNA secondary structure comparison algorithms J Allali, Y d’Aubenton Carafa, C Chauve, A Denise, C Drevet, P Ferraro, ... Journées Ouvertes de Biologie, Informatique et Mathématiques JOBIM 8, 67-68, 2008 | 9 | 2008 |
| Rhoban football club–team description paper J Allali, L Gondry, L Hofer, P Laborde-Zubieta, O Ly, S N’Guyen, ... Technical report, 2019 | 6 | 2019 |
| The gapped-factor tree P Peterlongo, J Allali, MF Sagot Prague Stringology Conference 2006, 182--196, 2006 | 6 | 2006 |
| A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets A Ayllón-Benítez, F Mougin, J Allali, R Thiébaut, P Thebault PLoS One 13 (11), e0208037, 2018 | 5 | 2018 |
| Efficient chaining of seeds in ordered trees J Allali, C Chauve, P Ferraro, AL Gaillard International Workshop on Combinatorial Algorithms, 260-273, 2010 | 5 | 2010 |
| Indexing gapped-factors using a tree P Peterlongo, J Allali, MF Sagot International Journal of Foundations of Computer Science 19 (01), 71-87, 2008 | 5 | 2008 |
| Comparaison de structures secondaires d'ARN J Allali Université de Marne la Vallée, 2004 | 5 | 2004 |
