Guillaume Jospin
Guillaume Jospin
bioinformatician at AnimalBiome
Verified email at
Cited by
Cited by
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
D Coil, G Jospin, AE Darling
Bioinformatics 31 (4), 587-589, 2014
PhyloSift: phylogenetic analysis of genomes and metagenomes
AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen
PeerJ 2, e243, 2014
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ...
PLoS biology 16 (8), e2006352, 2018
Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation
PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ...
The ISME journal 13 (4), 921-936, 2019
Global marine bacterial diversity peaks at high latitudes in winter
J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O’dwyer, ...
The ISME journal 7 (9), 1669-1677, 2013
Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups
D Wu, G Jospin, JA Eisen
PloS one 8 (10), e77033, 2013
Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia
LM Olde Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, ...
Translational psychiatry 8 (1), 96, 2018
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243
AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
LGE Wilkins, CL Ettinger, G Jospin, JA Eisen
Scientific reports 9 (1), 3059, 2019
The bacterial communities of Drosophila suzukii collected from undamaged cherries
JA Chandler, PM James, G Jospin, JM Lang
PeerJ 2, e474, 2014
Recent outbreaks of shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance
VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi
Msphere 1 (6), 10.1128/msphere. 00344-16, 2016
Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections
J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian
PLoS One 11 (12), e0168177, 2016
A phylogenetically novel cyanobacterium most closely related to Gloeobacter
CL Grettenberger, DY Sumner, K Wall, CT Brown, JA Eisen, TJ Mackey, ...
The ISME journal 14 (8), 2142-2152, 2020
Swabs to genomes: a comprehensive workflow
MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil
PeerJ 3, e960, 2015
4th, Bik HM, Eisen JA
AE Darling, G Jospin, E Lowe, FA Matsen
PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014
Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon
S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil
Frontiers in cellular and infection microbiology 5, 32, 2015
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource
TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen
BMC bioinformatics 13, 1-12, 2012
Comparison of whole-genome sequences of Legionella pneumophila in tap water and in clinical strains, Flint, Michigan, USA, 2016
E Garner, CL Brown, DO Schwake, WJ Rhoads, G Arango-Argoty, ...
Emerging infectious diseases 25 (11), 2013, 2019
Microbial community succession and nutrient cycling responses following perturbations of experimental saltwater aquaria
HM Bik, A Alexiev, SK Aulakh, L Bharadwaj, J Flanagan, JM Haggerty, ...
MSphere 4 (1), 10.1128/msphere. 00043-19, 2019
Bacteria isolated from Bengal cat (Felis catus× Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling
MS Yamaguchi, HH Ganz, AW Cho, TH Zaw, G Jospin, MM McCartney, ...
PloS one 14 (9), e0216846, 2019
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Articles 1–20