Sergey Khayrulin
Sergey Khayrulin
A.P. Ershov INSTITUTE OF INFORMATICS SYSTEMS Russian Academy of Sciences Siberian Branch
Verified email at iis.nsk.su - Homepage
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OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
1122014
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3, 4), 137-147, 2012
432012
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
322016
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
242018
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
172018
The OpenWorm Project: currently available resources and future plans
P Gleeson, M Cantarelli, M Currie, J Hokanson, G Idili, S Khayrulin, ...
BMC neuroscience 16 (1), 1-2, 2015
52015
Integration of predictive-corrective incompressible SPH and Hodgkin-Huxley based models in the OpenWorm in silico model of C. elegans
M Vella, A Palyanov, P Gleeson, S Khayrulin
BMC Neuroscience 14 (S1), P209, 2013
52013
The neuroml c. elegans connectome
T Busbice, P Gleeson, S Khayrulin, M Cantarelli, A Dibert, G Idili, ...
Neuroinf. Abstract book, 82-83, 2012
52012
Sibernetic: a software complex based on the PCI SPH algorithm aimed at simulation problems in biomechanics
AY Palyanov, SS Khayrulin
Russian Journal of Genetics: Applied Research 5 (6), 635-641, 2015
42015
Managing complexity in multi-algorithm, multi-scale biological simulations: an integrated software engineering and neuroinformatics approach
G Idili, M Cantarelli, M Buibas, T Busbice, J Coggan, C Grove, S Khayrulin, ...
Frontiers in Neuroinformatics Conference Abstract: 4th INCF Congress of …, 2011
32011
Realistic 3D simulation of C. elegans swimming and crawling with Sibernetic environment
AY Palyanov, SS Khayrulin
Mathematical Modeling and High Performance Computing in Bioinformatics …, 2016
12016
Algorithms and software tools for analysis of textural images
GB Abdikerimova, AL Bychkov, W Xinyu, FA Murzin, NE Russkikh, ...
Science Intensive Software, 6-13, 2019
2019
Analysis of images obtained by the transmission electronic microscopy
GB Abdikerimova, AL Bychkov, SS Khayrulin, FA Murzin, NE Russkikh, ...
Materials Today: Proceedings 12, 90-92, 2019
2019
Software tools for cell walls segmentation in microphotography
GB Abdikerimova, FA Murzin, AL Bychkov, J Tussupov, S Khayrulin, ...
Journal of Theoretical and Applied Information Technology 96 (15), 4783-4793, 2018
2018
PROCESSING IMAGES OBTAINED BY THE TRANSMISSION ELECTRON MICROSCOPY
GB Abdikerimova, AL Bychkov, SS Khayrulin, FA Murzin, NE Russkikh, ...
Fundamental Bases of Mechanochemical Technologies, 52-52, 2018
2018
A SOFTWARE TOOL FOR VISUALIZATION AND CONTROL OF BIOLOGICAL NEURAL NETWORKS ACTIVITY BASED ON THE NEURON SIMULATION ENVIRONMENT
SS Khayrulin, NA Serdtseva, AY Palyanov
Mathematical Modeling and High Performance Computing in Bioinformatics …, 2016
2016
P010The NeuroML C. elegans Connectome
T Busbice, P Gleeson, S Khayrulin, M Cantarelli, A Dibert, G Idili, ...
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G Idili, M Cantarelli, M Buibas, T Busbice, J Coggan, C Grove, S Khayrulin, ...
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