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Richard Neher
Richard Neher
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Cited by
Year
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
23682018
TreeTime: maximum likelihood phylodynamic analysis
P Sagulenko, V Puller, R Neher
Virus Evolution 4 (1), vex042, 2018
7162018
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
5592020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
4892021
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss Medical Weekly 150 (1112), 2020
3382020
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
3252020
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of Open Source Software 6 (67), 3773, 2021
3092021
Novel SARS-CoV-2 variants: the pandemics within the pandemic
E Boehm, I Kronig, RA Neher, I Eckerle, P Vetter, L Kaiser
Clinical Microbiology and Infection 27 (8), 1109-1117, 2021
3062021
2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate–a word of caution
M Battegay, R Kuehl, S Tschudin-Sutter, HH Hirsch, AF Widmer, ...
Swiss Medical Weekly 150 (0506), 2020
2832020
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
2572020
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
2282020
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic Acids Research 46 (1), e5-e5, 2017
2242017
Population genomics of intrapatient HIV-1 evolution
F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert, RA Neher
eLife 4, e11282, 2016
2192016
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature Microbiology, 1-3, 2021
2062021
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ...
PLoS biology 19 (5), e3001236, 2021
202*2021
Genealogies of rapidly adapting populations
RA Neher, O Hallatschek
Proceedings of the National Academy of Sciences 110 (2), 437-442, 2013
1982013
Recombination rate and selection strength in HIV intra-patient evolution
RA Neher, T Leitner
PLoS computational biology 6 (1), e1000660, 2010
1972010
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
RA Neher, T Bedford, RS Daniels, CA Russell, BI Shraiman
Proceedings of the National Academy of Sciences 113 (12), E1701-E1709, 2016
1702016
Predicting evolution from the shape of genealogical trees
RA Neher, CA Russell, BI Shraiman
eLife 3, e03568, 2014
1612014
Genetic draft, selective interference, and population genetics of rapid adaptation
RA Neher
Annual review of Ecology, evolution, and Systematics 44, 195-215, 2013
1592013
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