|Pan-cancer analysis of the extent and consequences of intra-tumor heterogeneity|
N Andor, T Graham, M Jansen, LC Xia, C Aktipis, C Petritsch, H Ji, ...
Nature Medicine 22, 105-113, 2016
|Marine bacterial, archaeal and protistan association networks reveal ecological linkages|
JA Steele, PD Countway, L Xia, PD Vigil, JM Beman, DY Kim, CET Chow, ...
The ISME journal 5 (9), 1414-1425, 2011
|Correlation detection strategies in microbial data sets vary widely in sensitivity and precision|
S Weiss, VW Treuren, C Lozupone, K Faust, J Friedman, Y Deng, LC Xia, ...
The ISME Journal 10 (7), 1669, 2016
|Extended local similarity analysis of microbial community and other time series data with replicates|
LC Xia, JA Steele, JA Cram, ZG Cardon, SL Simmons, JJ Vallino, ...
BMC systems biology 5, S15, 2011
|Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads|
LC Xia, JA Cram, T Chen, JA Fuhrman, F Sun
PloS ONE 6 (12), e27992, 2011
|Efficient statistical significance approximation for local similarity analysis of high-throughput time series data|
LC Xia, D Ai, J Cram, JA Fuhrman, F Sun
Bioinformatics 29 (2), 230-237, 2013
|Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis|
D Ai, R Huang, J Wen, C Li, J Zhu, LC Xia#
BMC Genomics 18, 1041, 2017
|Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes|
JA Cram, LC Xia, DM Needham, R Sachdeva, F Sun, JA Fuhrman
The ISME journal 9 (12), 2573-2586, 2015
|CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis|
GW Shin, SM Grimes, HJ Lee, BT Lau, LC Xia, HP Ji
Nature communications 8 (1), 1-13, 2017
|PPLook: an automated data mining tool for protein-protein interaction|
SW Zhang, YJ Li, L Xia, Q Pan
BMC Bioinformatics 11 (1), 326, 2010
|Identification of large rearrangements in cancer genomes with barcode linked reads|
LC Xia, JM Bell, C Wood-Bouwens, JJ Chen, NR Zhang, HP Ji
Nucleic acids research 46 (4), e19, 2018
|Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy|
JM Bell, BT Lau, SU Greer, C Wood-Bouwens, LC Xia, ID Connolly, ...
Nucleic acids research 45 (19), e162-e162, 2017
|Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.|
A Cushing, A Kamali, M Winters, E Hopmans, J Bell, SM Grimes, LC Xia, ...
Scientific Reports 5, 16178, 2015
|Using Decision Tree Aggregation with Random Forest Model to Identify Gut Microbes Associated with Colorectal Cancer|
D Ai*, H Pan, R Han, X Li, G Liu, LC Xia*
Genes 10 (2), 112, 2019
|Identifying Gut Microbiota Associated with Colorectal Cancer Using a Zero-Inflated Lognormal Model|
D Ai*, H Pan, X Li, Y Gao, G Liu, LC Xia*
Frontiers in Microbiology 10, 826, 2019
|Phase transition in sequence unique reconstruction|
L Xia, C Zhou
Journal of Systems Science and Complexity 20 (1), 18-29, 2007
|A genome-wide approach for detecting novel insertion-deletion variants of mid-range size|
LC Xia, S Sakshuwong, E Hopmans, J Bell, S Grimes, D Siegmund, H Ji, ...
Nucleic Acids Research 44 (15), e126, 2016
|A rare missense variant of CASP7 is associated with familial late-onset Alzheimer's disease|
X Zhang, C Zhu, G Beecham, BN Vardarajan, Y Ma, D Lancour, JJ Farrell, ...
Alzheimer's & Dementia 15 (3), 441-452, 2019
|Association of Rare Coding Mutations With Alzheimer Disease and Other Dementias Among Adults of European Ancestry|
FLA Patel D, Mez J, Vardarajan BN, Staley L, Chung J, Zhang X, Farrell JJ ...
JAMA Netw Open 2 (3), e191350, 2019
|SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution|
LC Xia, D Ai, H Lee, N Andor, C Li, NR Zhang, HP Ji
GigaScience 7, giy081, 2018