SHIJIA ZHU
SHIJIA ZHU
Verified email at UTSouthwestern.edu - Homepage
TitleCited byYear
DNA methylation on N6-adenine in mammalian embryonic stem cells
TP Wu, T Wang, MG Seetin, Y Lai, S Zhu, K Lin, Y Liu, SD Byrum, ...
Nature 532 (7599), 329, 2016
2342016
Dysregulation of miRNA-9 in a subset of schizophrenia patient-derived neural progenitor cells
A Topol, S Zhu, BJ Hartley, J English, ME Hauberg, N Tran, ...
Cell reports 15 (5), 1024-1036, 2016
672016
Altered WNT signaling in human induced pluripotent stem cell neural progenitor cells derived from four schizophrenia patients
A Topol, S Zhu, N Tran, A Simone, G Fang, KJ Brennand
Biological psychiatry 78 (6), e29-e34, 2015
512015
Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes
J Beaulaurier, XS Zhang, S Zhu, R Sebra, C Rosenbluh, G Deikus, ...
Nature communications 6, 7438, 2015
432015
Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation
J Beaulaurier, S Zhu, G Deikus, I Mogno, XS Zhang, A Davis-Richardson, ...
Nature Biotechnology, 2017
352017
Increased abundance of translation machinery in stem cell–derived neural progenitor cells from four schizophrenia patients
A Topol, JA English, E Flaherty, P Rajarajan, BJ Hartley, S Gupta, ...
Translational psychiatry 5 (10), e662, 2015
282015
A cytosine methytransferase modulates the cell envelope stress response in the cholera pathogen
MC Chao, S Zhu, S Kimura, BM Davis, EE Schadt, G Fang, MK Waldor
PLoS genetics 11 (11), e1005666, 2015
212015
Modeling exon expression using histone modifications
S Zhu, G Wang, B Liu, Y Wang
PLoS One 8 (6), e67448, 2013
152013
Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing
S Zhu, J Beaulaurier, G Deikus, TP Wu, M Strahl, Z Hao, G Luo, ...
Genome research 28 (7), 1067-1078, 2018
122018
Chromatin structure characteristics of pre-miRNA genomic sequences
S Zhu, Q Jiang, G Wang, B Liu, M Teng, Y Wang
BMC genomics 12 (1), 329, 2011
82011
Hidden Markov induced Dynamic Bayesian Network for recovering time evolving gene regulatory networks
S Zhu, Y Wang
Scientific reports 5, 17841, 2015
72015
Dysregulation of miRNA-9 in a subset of schizophrenia patient-derived neural progenitor cells. Cell Rep 15: 1024–1036
A Topol, S Zhu, BJ Hartley, J English, ME Hauberg, N Tran, ...
CrossRef PubMed PubMedCentral, 2016
52016
Correction: A cytosine methytransferase modulates the cell envelope stress response in the Cholera pathogen
MC Chao, S Zhu, S Kimura, BM Davis, EE Schadt, G Fang, MK Waldor
PLoS genetics 11 (12), e1005739, 2015
32015
GIGSEA: genotype imputed gene set enrichment analysis using GWAS summary level data
S Zhu, T Qian, Y Hoshida, Y Shen, J Yu, K Hao
Bioinformatics 35 (1), 160-163, 2018
22018
Matrix Epistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment
S Zhu, G Fang
Bioinformatics, 2018
22018
Molecular heterogeneity in hepatocellular carcinoma
S Zhu, Y Hoshida
Hepatic oncology 5 (01), HEP10, 2018
12018
TGG Based Automatic Transformation Between SBML and Other Biological Modeling Languages [J]
Z Shijia, W Yadong, J Chunguang, T Haijun
Journal of Computer Research and Development 5, 2011
12011
Use of big data in drug development for precision medicine: an update
T Qian, S Zhu, Y Hoshida
Expert review of precision medicine and drug development 4 (3), 189-200, 2019
2019
MPIC: Molecular Prognostic Indicators in Cirrhosis database for clinical context-specific in silico prognostic biomarker validation
SH Yip, N Fujiwara, J Burke, A Shetler, C Peralta, T Qian, H Hoshida, ...
Frontiers in Genetics 10, 830, 2019
2019
ABERRANT NRXN1 alpha SPLICING ARISING FROM 2P16. 3 HETEROZYGOUS DELETIONS IMPACTS NEURONAL FUNCTION
E Absherty, S Zhu, E Cheng, A Antoine, M Halpern, G Deikus, P Gochman, ...
EUROPEAN NEUROPSYCHOPHARMACOLOGY 29, 1077-1078, 2019
2019
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