Omar Wagih
Omar Wagih
Deep Genomics
Verified email at deepgenomics.com
TitleCited byYear
The mutational landscape of phosphorylation signaling in cancer
J Reimand, O Wagih, GD Bader
Scientific reports 3, 2651, 2013
1312013
Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design
JD Smith, S Suresh, U Schlecht, M Wu, O Wagih, G Peltz, RW Davis, ...
Genome biology 17 (1), 45, 2016
742016
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli
M Babu, R Arnold, C Bundalovic-Torma, A Gagarinova, KS Wong, ...
PLoS genetics 10 (2), e1004120, 2014
702014
SGAtools: one-stop analysis and visualization of array-based genetic interaction screens
O Wagih, M Usaj, A Baryshnikova, B VanderSluis, E Kuzmin, M Costanzo, ...
Nucleic acids research 41 (W1), W591-W596, 2013
662013
ggseqlogo: a versatile R package for drawing sequence logos
O Wagih
Bioinformatics 33 (22), 3645-3647, 2017
542017
Evolutionary constraint and disease associations of post-translational modification sites in human genomes
J Reimand, O Wagih, GD Bader
PLoS genetics 11 (1), e1004919, 2015
392015
MIMP: predicting the impact of mutations on kinase-substrate phosphorylation
O Wagih, J Reimand, GD Bader
Nature methods 12 (6), 531, 2015
342015
Gitter: a robust and accurate method for quantification of colony sizes from plate images
O Wagih, L Parts
G3: Genes, Genomes, Genetics 4 (3), 547-552, 2014
262014
Microevolution of serial clinical isolates of Cryptococcus neoformans var. grubii and C. gattii
Y Chen, RA Farrer, C Giamberardino, S Sakthikumar, A Jones, T Yang, ...
MBio 8 (2), e00166-17, 2017
192017
Conditional epistatic interaction maps reveal global functional rewiring of genome integrity pathways in Escherichia coli
A Kumar, N Beloglazova, C Bundalovic-Torma, S Phanse, V Deineko, ...
Cell reports 14 (3), 648-661, 2016
192016
Phenotype inference in an Escherichia coli strain panel
M Galardini, A Koumoutsi, L Herrera-Dominguez, JAC Varela, A Telzerow, ...
Elife 6, e31035, 2017
182017
Systematic analysis of transcriptional and post-transcriptional regulation of metabolism in yeast
E Gonçalves, ZR Nakic, M Zampieri, O Wagih, D Ochoa, U Sauer, ...
PLoS computational biology 13 (1), e1005297, 2017
182017
Uncovering phosphorylation-based specificities through functional interaction networks
O Wagih, N Sugiyama, Y Ishihama, P Beltrao
Molecular & Cellular Proteomics 15 (1), 236-245, 2016
132016
A resource of variant effect predictions of single nucleotide variants in model organisms
O Wagih, M Galardini, BP Busby, D Memon, A Typas, P Beltrao
Molecular systems biology 14 (12), 2018
102018
Prediction of functionally important phospho-regulatory events in Xenopus laevis oocytes
JR Johnson, SD Santos, T Johnson, U Pieper, M Strumillo, O Wagih, ...
PLoS computational biology 11 (8), e1004362, 2015
82015
Identifications of putative PKA substrates with quantitative phosphoproteomics and primary-sequence-based scoring
H Imamura, O Wagih, T Niinae, N Sugiyama, P Beltrao, Y Ishihama
Journal of proteome research 16 (4), 1825-1830, 2017
62017
RWebLogo: plotting custom sequence logos
O Wagih
The Comprehensive R Archive Network, 2014
62014
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set
N Del-Toro, M Duesbury, M Koch, L Perfetto, A Shrivastava, D Ochoa, ...
Nature communications 10 (1), 10, 2019
42019
Comprehensive variant effect predictions of single nucleotide variants in model organisms
O Wagih, B Busby, M Galardini, D Memon, A Typas, P Beltrao
BioRxiv, 313031, 2018
32018
Allele-specific transcription factor binding as a benchmark for assessing variant impact predictors
O Wagih, D Merico, A Delong, BJ Frey
BioRxiv, 253427, 2018
32018
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Articles 1–20