Paulo P. Amaral
Paulo P. Amaral
Assistant Professor, Insper Institute of Education and Research
Verified email at
Cited by
Cited by
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
ME Dinger, PP Amaral, TR Mercer, KC Pang, SJ Bruce, BB Gardiner, ...
Genome research 18 (9), 1433-1445, 2008
The eukaryotic genome as an RNA machine
PP Amaral, ME Dinger, TR Mercer, JS Mattick
science 319 (5871), 1787-1789, 2008
MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
H Sunwoo, ME Dinger, JE Wilusz, PP Amaral, JS Mattick, DL Spector
Genome research 19 (3), 347-359, 2009
lncRNAdb: a reference database for long noncoding RNAs
PP Amaral, MB Clark, DK Gascoigne, ME Dinger, JS Mattick
Nucleic acids research 39 (suppl_1), D146-D151, 2011
Noncoding RNA in development
PP Amaral, JS Mattick
Mammalian genome 19, 454-492, 2008
Long non-coding RNAs: definitions, functions, challenges and recommendations
JS Mattick, PP Amaral, P Carninci, S Carpenter, HY Chang, LL Chen, ...
Nature reviews Molecular cell biology 24 (6), 430-447, 2023
The reality of pervasive transcription
MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft, JL Rinn, ...
PLoS biology 9 (7), e1000625, 2011
RNA regulation of epigenetic processes
JS Mattick, PP Amaral, ME Dinger, TR Mercer, MF Mehler
Bioessays 31 (1), 51-59, 2009
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
HI Nakaya, PP Amaral, R Louro, A Lopes, AA Fachel, YB Moreira, ...
Genome biology 8, 1-25, 2007
RNA modifications detection by comparative Nanopore direct RNA sequencing
A Leger, PP Amaral, L Pandolfini, C Capitanchik, F Capraro, V Miano, ...
Nature communications 12 (1), 7198, 2021
Complex architecture and regulated expression of the Sox2ot locus during vertebrate development
PP Amaral, C Neyt, SJ Wilkins, ME Askarian-Amiri, SM Sunkin, ...
Rna 15 (11), 2013-2027, 2009
Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications
ME Dinger, PP Amaral, TR Mercer, JS Mattick
Briefings in Functional Genomics and Proteomics 8 (6), 407-423, 2009
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci
PP Amaral, T Leonardi, N Han, E Viré, DK Gascoigne, R Arias-Carrasco, ...
Genome biology 19, 1-21, 2018
Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective
PP Amaral, ME Dinger, JS Mattick
Briefings in functional genomics 12 (3), 254-278, 2013
Androgen responsive intronic non-coding RNAs
R Louro, HI Nakaya, PP Amaral, F Festa, MC Sogayar, AM da Silva, ...
BMC biology 5, 1-14, 2007
Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
DK Gascoigne, SW Cheetham, PB Cattenoz, MB Clark, PP Amaral, ...
Bioinformatics 28 (23), 3042-3050, 2012
The non-coding snRNA 7SKcontrols transcriptional termination, poising, and bidirectionality in embryonic stem cells
G Castelo-Branco, PP Amaral, PG Engström, SC Robson, SC Marques, ...
Genome biology 14, 1-18, 2013
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination
DS de Lima, LE Cardozo, V Maracaja-Coutinho, A Suhrbier, K Mane, ...
Proceedings of the National Academy of Sciences 116 (34), 17121-17126, 2019
RNA, the epicenter of genetic information
J Mattick, P Amaral
Taylor & Francis, 2023
The status of the human gene catalogue
P Amaral, S Carbonell-Sala, FM De La Vega, T Faial, A Frankish, ...
Nature 622 (7981), 41-47, 2023
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