Joshua Baller
Joshua Baller
Director of Applications and Services, Minnesota Supercomputing Institute
Verified email at umn.edu
Title
Cited by
Cited by
Year
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
T Cermak, EL Doyle, M Christian, L Wang, Y Zhang, C Schmidt, JA Baller, ...
Nucleic acids research 39 (12), e82-e82, 2011
20692011
Transcription activator-like effector nucleases enable efficient plant genome engineering
Y Zhang, F Zhang, X Li, JA Baller, Y Qi, CG Starker, AJ Bogdanove, ...
Plant physiology 161 (1), 20-27, 2013
3622013
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways
Y Qi, Y Zhang, F Zhang, JA Baller, SC Cleland, Y Ryu, CG Starker, ...
Genome research 23 (3), 547-554, 2013
1262013
Putting genetic interactions in context through a global modular decomposition
J Bellay, G Atluri, TL Sing, K Toufighi, M Costanzo, PSM Ribeiro, ...
Genome research 21 (8), 1375-1387, 2011
652011
An RNA polymerase III subunit determines sites of retrotransposon integration
PL Antoine Bridier-Nahmias, Aurélie Tchalikian-Cosson, Joshua A. Baller ...
Science 348 (6234), 585-588, 2015
532015
A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon
JA Baller, J Gao, R Stamenova, MJ Curcio, DF Voytas
Genome research 22 (4), 704-713, 2012
532012
The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease
AA Pragman, T Lyu, JA Baller, TJ Gould, RF Kelly, CS Reilly, RE Isaacson, ...
Microbiome 6 (1), 7, 2018
462018
The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization, and expression features
MZ Anderson, JA Baller, K Dulmage, L Wigen, J Berman
Eukaryotic cell 11 (10), 1268-1275, 2012
312012
Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2
MZ Anderson, AC Gerstein, L Wigen, JA Baller, J Berman
PLoS Genet 10 (7), e1004436, 2014
282014
Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5
JA Baller, J Gao, DF Voytas
Proceedings of the National Academy of Sciences 108 (51), 20351-20356, 2011
232011
Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres
HJ Tsai, JA Baller, I Liachko, A Koren, LS Burrack, MA Hickman, ...
MBio 5 (5), 2014
202014
Comprehensive functional analysis of the Enterococcus faecalis core genome using an ordered, sequence-defined collection of insertional mutations in strain OG1RF
JL Dale, KB Beckman, JLE Willett, JL Nilson, NP Palani, JA Baller, ...
MSystems 3 (5), 2018
192018
Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants
Y Qi, Y Zhang, JA Baller, DF Voytas
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 783, 9-14, 2016
152016
Comparison of tissue sample processing methods for harvesting the viral metagenome and a snapshot of the RNA viral community in a turkey gut
JD Shah, J Baller, Y Zhang, K Silverstein, Z Xing, CJ Cardona
Journal of virological methods 209, 15-24, 2014
142014
ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells.
Q Shan, NJ Baltes, P Atkins, ER Kirkland, Y Zhang, JA Baller, LG Lowder, ...
Journal of genetics and genomics= Yi chuan xue bao 45 (12), 681, 2018
82018
Development of the intestinal RNA virus community of healthy broiler chickens
JD Shah, PT Desai, Y Zhang, SK Scharber, J Baller, ZS Xing, CJ Cardona
PLoS One 11 (2), e0150094, 2016
42016
Abstract B72: Single-cell analysis of chemotherapy resistance in ovarian cancer
BJ Winterhoff, S Talukdar, Z Chang, J Cepela, M Shetty, J Woo, Y Zhang, ...
Clinical Cancer Research 26 (13 Supplement), B72-B72, 2020
2020
Single-cell analysis of chemotherapy resistance in ovarian cancer.
BJ Winterhoff, S Talukdar, Z Chang, J Cepela, M Shetty, J Woo, Y Zhang, ...
CLINICAL CANCER RESEARCH 26 (13), 117-117, 2020
2020
Single cell analysis of chemotherapy resistance in ovarian cancer
AM Schefter, T Starr, S Talukdar, Z Chang, J Cepela, M Shetty, J Woo, ...
SGO 2020 Annual Meeting on Women's Cancer, 2020
2020
Polygenic Risk Score Associations With Nonpharmacologic Interventions for PTSD
J Bishop, B Guo, A Lee, P Thuras, J Baller, C Jiao, C Erbes, M Polusny, ...
NEUROPSYCHOPHARMACOLOGY 44 (SUPPL 1), 270-271, 2019
2019
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Articles 1–20