| Lessons learned from the chameleon testbed K Keahey, J Anderson, Z Zhen, P Riteau, P Ruth, D Stanzione, M Cevik, ... 2020 USENIX annual technical conference (USENIX ATC 20), 219-233, 2020 | 245 | 2020 |
| Distributed systems of microservices using docker and serfnode J Stubbs, W Moreira, R Dooley 2015 7th International Workshop on Science Gateways, 34-39, 2015 | 169 | 2015 |
| Tapis: An API platform for reproducible, distributed computational research J Stubbs, R Cardone, M Packard, A Jamthe, S Padhy, S Terry, J Looney, ... Advances in Information and Communication: Proceedings of the 2021 Future of …, 2021 | 41 | 2021 |
| Tapis api development with python: best practices in scientific rest api implementation: experience implementing a distributed stream api SB Cleveland, A Jamthe, S Padhy, J Stubbs, M Packard, J Looney, ... Practice and experience in advanced research computing, 181-187, 2020 | 22 | 2020 |
| Building science gateway infrastructure in the middle of the pacific and beyond: experiences using the agave deployer and agave platform to build science gateways SB Cleveland, R Dooley, D Perry, J Stubbs, JM Fonner, GA Jacobs Proceedings of the Practice and Experience on Advanced Research Computing, 1-8, 2018 | 10 | 2018 |
| Rapid Development of Scalable, Distributed Computation with Abaco. J Stubbs, M Vaughn, J Looney IWSG, 2018 | 10 | 2018 |
| Araport: an application platform for data discovery MR Hanlon, M Vaughn, S Mock, R Dooley, W Moreira, J Stubbs, C Town, ... Concurrency and Computation: Practice and Experience 27 (16), 4412-4422, 2015 | 10 | 2015 |
| Dynamically provisioning portable gateway infrastructure using docker and agave R Dooley, J Stubbs Proceedings of the 2014 Annual Conference on Extreme Science and Engineering …, 2014 | 10 | 2014 |
| Round trip: an automated pipeline for experimental design, execution, and analysis D Bryce, RP Goldman, M DeHaven, J Beal, B Bartley, TT Nguyen, ... ACS Synthetic Biology 11 (2), 608-622, 2022 | 9 | 2022 |
| Prediction of whole-cell transcriptional response with machine learning M Eslami, AE Borujeni, H Eramian, M Weston, G Zheng, J Urrutia, ... Bioinformatics 38 (2), 404-409, 2022 | 9 | 2022 |
| Integrating jupyter into research computing ecosystems: Challenges and successes in architecting jupyterhub for collaborative research computing ecosystems J Stubbs, J Looney, M Poindexter, E Chalhoub, GJ Zynda, ES Ferlanti, ... Practice and Experience in Advanced Research Computing, 91-98, 2020 | 9 | 2020 |
| Containers-as-a-service via the Actor Model J Stubbs, R Dooley, M Vaughn 11th Gateway Computing Environments Conference, 2017 | 8 | 2017 |
| Real-World, Self-Hosted Kubernetes Experience M Packard, J Stubbs, J Drake, C Garcia Practice and Experience in Advanced Research Computing, 1-5, 2021 | 7 | 2021 |
| Operational lessons from chameleon K Keahey, J Anderson, P Ruth, J Colleran, C Hammock, J Stubbs, Z Zhen Proceedings of the Humans in the Loop: Enabling and Facilitating Research on …, 2019 | 6 | 2019 |
| Integrating science gateways with xsede security: A survey of credential management approaches J Basney, J Gaynor, S Marru, M Pierce, TA Kanewala, R Dooley, J Stubbs Proceedings of the 2014 Annual Conference on Extreme Science and Engineering …, 2014 | 6 | 2014 |
| An interactive knowledge and learning environment in smart foodsheds Y Tu, X Wang, R Qiu, HW Shen, M Miller, J Rao, S Gao, PR Huber, ... IEEE Computer Graphics and Applications, 2023 | 5 | 2023 |
| Genapp, containers and Abaco E Brookes, J Stubbs Proceedings of the Practice and Experience in Advanced Research Computing on …, 2019 | 4 | 2019 |
| Virtualizing the stampede2 supercomputer with applications to hpc in the cloud WC Proctor, M Packard, A Jamthe, R Cardone, J Stubbs Proceedings of the Practice and Experience on Advanced Research Computing, 1-6, 2018 | 4 | 2018 |
| Endofday: A Container Workflow Engine for Scalable, Reproducible Computation. J Stubbs, S Talley, W Moreira, R Dooley, A Stapleton IWSG, 2016 | 4 | 2016 |
| Potent elements and tight closure in artinian modules JF Stubbs University of Michigan, 2008 | 4 | 2008 |
