| Fast and sensitive taxonomic classification for metagenomics with Kaiju P Menzel, KL Ng, A Krogh Nature communications 7 (1), 11257, 2016 | 1590 | 2016 |
| Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones L Roer, S Overballe-Petersen, F Hansen, K Schønning, M Wang, ... Msphere 3 (4), 10.1128/msphere. 00337-18, 2018 | 170 | 2018 |
| Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat Commun 7: 11257 P Menzel, KL Ng, A Krogh | 153 | 2016 |
| Occurrence and significance of Omicron BA. 1 infection followed by BA. 2 reinfection M Stegger, SM Edslev, RN Sieber, A Cäcilia Ingham, KL Ng, MHE Tang, ... MedRxiv, 2022.02. 19.22271112, 2022 | 69 | 2022 |
| Diurnal variations of human circulating cell-free micro-RNA NHH Heegaard, AL Carlsen, B Lilje, KL Ng, ME Rønne, HL Jørgensen, ... PloS one 11 (8), e0160577, 2016 | 61 | 2016 |
| Vaginal microbiota and in vitro fertilization outcomes: development of a simple diagnostic tool to predict patients at risk of a poor reproductive outcome T Haahr, P Humaidan, HO Elbaek, B Alsbjerg, RJ Laursen, K Rygaard, ... The Journal of Infectious Diseases 219 (11), 1809-1817, 2019 | 54 | 2019 |
| Emergence of enteroaggregative Escherichia coli within the ST131 lineage as a cause of extraintestinal infections EJ Boll, S Overballe-Petersen, H Hasman, L Roer, K Ng, F Scheutz, ... MBio 11 (3), 10.1128/mbio. 00353-20, 2020 | 48* | 2020 |
| Turn Up the Heat—Food and Clinical Escherichia coli Isolates Feature Two Transferrable Loci of Heat Resistance EJ Boll, R Marti, H Hasman, S Overballe-Petersen, M Stegger, K Ng, ... Frontiers in Microbiology 8, 579, 2017 | 46 | 2017 |
| OXA-Carbapenemases Present in Clinical Acinetobacter baumannii-calcoaceticus Complex Isolates from Patients in Kurdistan Region, Iraq AR Ganjo, DM Maghdid, IY Mansoor, DJ Kok, JA Severin, HA Verbrugh, ... Microbial drug resistance 22 (8), 627-637, 2016 | 36 | 2016 |
| Complete nucleotide sequence of an Escherichia coli sequence type 410 strain carrying bla NDM-5 on an IncF multidrug resistance plasmid and bla OXA-181 on an IncX3 plasmid S Overballe-Petersen, L Roer, K Ng, F Hansen, US Justesen, ... Genome announcements 6 (5), 10.1128/genomea. 01542-17, 2018 | 33 | 2018 |
| Whole-genome sequencing of bloodstream Staphylococcus aureus isolates does not distinguish bacteraemia from endocarditis B Lilje, RV Rasmussen, A Dahl, M Stegger, RL Skov, VG Fowler Jr, KL Ng, ... Microbial genomics 3 (11), e000138, 2017 | 32 | 2017 |
| Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat Commun. 2016; 7: 11257 P Menzel, KL Ng, A Krogh | 26 | |
| Genome analysis of Clostridium perfringens isolates from healthy and necrotic enteritis infected chickens and turkeys T Ronco, M Stegger, KL Ng, B Lilje, U Lyhs, PS Andersen, K Pedersen BMC Research Notes 10, 1-6, 2017 | 25 | 2017 |
| Escherichia coli sequence type 410 is causing new international high-risk clones. mSphere 3: e00337-18 L Roer, S Overballe-Petersen, F Hansen, K Schønning, M Wang, ... Pubmed PMC, 2018 | 22 | 2018 |
| PME and Other ESBL-Positive Multiresistant Pseudomonas aeruginosa Isolated from Hospitalized Patients in the Region of Kurdistan, Iraq S van Burgh, DM Maghdid, AR Ganjo, IY Mansoor, DJ Kok, MH Fatah, ... Microbial Drug Resistance 25 (1), 32-38, 2019 | 17 | 2019 |
| Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia C Roe, M Stegger, B Lilje, TB Johannesen, KL Ng, RN Sieber, E Driebe, ... Microbial Genomics 6 (8), e000403, 2020 | 10 | 2020 |
| Comparative subgenomic mRNA profiles of SARS-CoV-2 Alpha, Delta and Omicron BA. 1, BA. 2 and BA. 5 sub-lineages using Danish COVID-19 genomic surveillance data MHE Tang, KL Ng, SM Edslev, K Ellegaard, M Stegger, S Alexandersen Ebiomedicine 93, 2023 | 3 | 2023 |
| Vaginal microbiota and IVF outcomes-Development of a simple diagnostic tool to predict patients at risk of a poor reproductive outcome T Haahr, PSH Al Humaidan, H Elbæk, B Alsbjerg, K Rygaard, B Lilje, ... | 3 | 2017 |
| Kaiju: Fast and sensitive taxonomic classification for metagenomics P Menzel, KL Ng, A Krogh | 2 | |
| ReadFilter-Filtering reads of interest for quicker downstream analysis KL Ng, TB Johannesen, M Osterlund, KK bioRxiv | 1 | 2018 |
