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Brian P Alcock
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
28982020
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
23262016
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
6662023
A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture
JA Nasir, RA Kozak, P Aftanas, AR Raphenya, KM Smith, F Maguire, ...
Viruses 12 (8), 895, 2020
992020
Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes
AK Guitor, AR Raphenya, J Klunk, M Kuch, B Alcock, MG Surette, ...
Antimicrobial agents and chemotherapy 64 (1), 10.1128/aac. 01324-19, 2019
892019
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
GigaScience 11, giac003, 2022
282022
The origins and genomic diversity of American Civil War Era smallpox vaccine strains
AT Duggan, J Klunk, AF Porter, AN Dhody, R Hicks, GL Smith, ...
Genome biology 21, 1-11, 2020
282020
Dynamic expression profiles of virus-responsive and putative antimicrobial peptide-encoding transcripts during Atlantic cod (Gadus morhua) embryonic and early larval development
ML Rise, JR Hall, BP Alcock, TS Hori
Gene 509 (2), 232-246, 2012
182012
Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents
H Sanderson, KL Gray, A Manuele, F Maguire, A Khan, C Liu, ...
Microbial genomics 8 (9), 000880, 2022
152022
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, N Alikhan, D Fornika, F Maguire, ...
152020
Evolution and nomenclature of the trimethoprim resistant dihydrofolate (dfr) reductases
M Faltyn, B Alcock, A McArthur
Preprints, 2019
102019
hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling
I Mendes, E Griffiths, A Manuele, D Fornika, SH Tausch, T Le Viet, ...
bioRxiv, 2024.03. 07.583950, 2024
52024
A standardized nomenclature for resistance-modifying agents in the Comprehensive Antibiotic Resistance Database
KW Smith, BP Alcock, S French, MA Farha, AR Raphenya, ED Brown, ...
Microbiology Spectrum 11 (6), e02744-23, 2023
32023
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline
C Langelier, D Lu, K Kalantar, V Chu, A Glascock, E Guerrero, N Bernick, ...
Research Square, 2024
12024
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline
D Lu, KL Kalantar, VT Chu, AL Glascock, ES Guerrero, N Bernick, ...
bioRxiv, 2024
12024
CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment
D Hackenberger, H Imtiaz, AR Raphenya, BP Alcock, HN Poinar, ...
bioRxiv, 2024.03. 27.587061, 2024
2024
Additional file 12 of The origins and genomic diversity of American Civil War Era smallpox vaccine strains
B Alcock, A Burke, WB Davidson, AN Dhody, AT Duggan, L Flanders, ...
2020
Duplicate Gene Evolution in a Tetraploid African Clawed Frog (Silurana)
B Alcock
2015
Functional Genomics Study of Defense-relevant Transcript Expression During Embryogenesis and Early Larval Development in the Atlantic Cod (Gadus Morhua)
BP Alcock
Memorial University of Newfoundland, 2011
2011
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Articles 1–19