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Shiping Yang
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Prediction of human-virus protein-protein interactions through a sequence embedding-based machine learning method
X Yang, S Yang, Q Li, S Wuchty, Z Zhang
Computational and structural biotechnology journal 18, 153-161, 2020
1202020
SuccinSite: a computational tool for the prediction of protein succinylation sites by exploiting the amino acid patterns and properties
MM Hasan, S Yang, Y Zhou, MNH Mollah
Molecular BioSystems 12 (3), 786-795, 2016
1012016
Mapping regulatory variants controlling gene expression in drought response and tolerance in maize
S Liu, C Li, H Wang, S Wang, S Yang, X Liu, J Yan, B Li, M Beatty, ...
Genome biology 21, 1-22, 2020
942020
HVIDB: a comprehensive database for human–virus protein–protein interactions
X Yang, X Lian, C Fu, S Wuchty, S Yang, Z Zhang
Briefings in bioinformatics 22 (2), 832-844, 2021
512021
Critical assessment and performance improvement of plant–pathogen protein–protein interaction prediction methods
S Yang, H Li, H He, Y Zhou, Z Zhang
Briefings in bioinformatics 20 (1), 274-287, 2019
492019
Transfer learning via multi-scale convolutional neural layers for human–virus protein–protein interaction prediction
X Yang, S Yang, X Lian, S Wuchty, Z Zhang
Bioinformatics 37 (24), 4771-4778, 2021
422021
Machine-learning-based predictor of human–bacteria protein–protein interactions by incorporating comprehensive host-network properties
X Lian, S Yang, H Li, C Fu, Z Zhang
Journal of proteome research 18 (5), 2195-2205, 2019
392019
Understanding human-virus protein-protein interactions using a human protein complex-based analysis framework
S Yang, C Fu, X Lian, X Dong, Z Zhang
MSystems 4 (2), 10.1128/msystems. 00303-18, 2019
382019
Cyanidin-3-o-glucoside directly binds to ERα36 and inhibits EGFR-positive triple-negative breast cancer
L Wang, H Li, S Yang, W Ma, M Liu, S Guo, J Zhan, H Zhang, SY Tsang, ...
Oncotarget 7 (42), 68864, 2016
352016
Functional analysis of female‐biased odorant binding protein 6 for volatile and nonvolatile host compounds in Adelphocoris lineolatus (Goeze)
L Sun, Q Wang, S Yang, Q Wang, Z Zhang, A Khashaveh, YJ Zhang, ...
Insect Molecular Biology 26 (5), 601-615, 2017
302017
SPAR: a random forest-based predictor for self-interacting proteins with fine-grained domain information
X Liu, S Yang, C Li, Z Zhang, J Song
Amino acids 48, 1655-1665, 2016
302016
PlaPPISite: a comprehensive resource for plant protein-protein interaction sites
X Yang, S Yang, H Qi, T Wang, H Li, Z Zhang
BMC plant biology 20, 1-11, 2020
282020
PlaD: a transcriptomics database for plant defense responses to pathogens, providing new insights into plant immune system
H Qi, Z Jiang, K Zhang, S Yang, F He, Z Zhang
Genomics, Proteomics and Bioinformatics 16 (4), 283-293, 2018
272018
MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins
Y Zhou, S Yang, T Mao, Z Zhang
Database 2015, bav108, 2015
242015
Prediction of protein ubiquitination sites in Arabidopsis thaliana
J Chen, J Zhao, S Yang, Z Chen, Z Zhang
Current Bioinformatics 14 (7), 614-620, 2019
232019
Current status and future perspectives of computational studies on human–virus protein–protein interactions
X Lian, X Yang, S Yang, Z Zhang
Briefings in Bioinformatics 22 (5), bbab029, 2021
212021
Prediction and analysis of human‐herpes simplex virus type 1 protein‐protein interactions by integrating multiple methods
X Lian, X Yang, J Shao, F Hou, S Yang, D Pan, Z Zhang
Quantitative Biology 8 (4), 312-324, 2020
122020
AraPPISite: a database of fine-grained protein–protein interaction site annotations for Arabidopsis thaliana
H Li, S Yang, C Wang, Y Zhou, Z Zhang
Plant molecular biology 92, 105-116, 2016
122016
GelFAP: Gene Functional Analysis Platform for Gastrodia elata
J Yang, Q Xiao, J Xu, L Da, L Guo, L Huang, Y Liu, W Xu, Z Su, S Yang, ...
Frontiers in Plant Science 11, 563237, 2020
82020
Identification of two nonrearranging IgSF genes in chicken reveals a novel family of putative remnants of an antigen receptor precursor
Y Fu, Z Yang, J Huang, X Cheng, X Wang, S Yang, L Ren, Z Lian, H Han, ...
The Journal of Immunology 202 (7), 1992-2004, 2019
72019
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