Eftychios A. Pnevmatikakis
Eftychios A. Pnevmatikakis
Center for Computational Mathematics, Flatiron Institute, Simons Foundation
Verified email at flatironinstitute.org
Title
Cited by
Cited by
Year
Simultaneous denoising, deconvolution, and demixing of calcium imaging data
EA Pnevmatikakis, D Soudry, Y Gao, TA Machado, J Merel, D Pfau, ...
Neuron 89 (2), 285-299, 2016
5712016
NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data
EA Pnevmatikakis, A Giovannucci
Journal of Neuroscience Methods 291, 83-94, 2017
2252017
Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data
P Zhou, SL Resendez, J Rodriguez-Romaguera, JC Jimenez, SQ Neufeld, ...
Elife 7, e28728, 2018
2012018
Simultaneous multi-plane imaging of neural circuits
W Yang, JK Miller, L Carrillo-Reid, E Pnevmatikakis, L Paninski, R Yuste, ...
Neuron 89 (2), 269-284, 2016
1732016
CaImAn an open source tool for scalable calcium imaging data analysis
A Giovannucci, J Friedrich, P Gunn, J Kalfon, BL Brown, SA Koay, ...
Elife 8, e38173, 2019
1592019
A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters
KD Piatkevich, EE Jung, C Straub, C Linghu, D Park, HJ Suk, ...
Nature chemical biology 14 (4), 352-360, 2018
1582018
Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning
A Giovannucci, A Badura, B Deverett, F Najafi, TD Pereira, Z Gao, I Ozden, ...
Nature neuroscience 20 (5), 727-734, 2017
1012017
Population-level representation of a temporal sequence underlying song production in the zebra finch
MA Picardo, J Merel, KA Katlowitz, D Vallentin, DE Okobi, SE Benezra, ...
Neuron 90 (4), 866-876, 2016
842016
MULTI-INPUT MULTI-OUTPUT TIME ENCODING AND DECODING MACHINES
AA Lazar, EA Pnevmatikakis
US Patent 20,120,039,399, 2012
832012
Video time encoding machines
AA Lazar, EA Pnevmatikakis
IEEE Transactions on Neural Networks 22 (3), 461-473, 2011
732011
Spatiotemporal receptive fields of barrel cortex revealed by reverse correlation of synaptic input
A Ramirez, EA Pnevmatikakis, J Merel, L Paninski, KD Miller, RM Bruno
Nature neuroscience 17 (6), 866-875, 2014
632014
Robust learning of low dimensional dynamics from large neural ensembles
D Pfau, EA Pnevmatikakis, L Paninski
Advances in Neural Information Processing Systems, 2391-2399, 2013
562013
Bayesian spike inference from calcium imaging data
EA Pnevmatikakis, J Merel, A Pakman, L Paninski
Asilomar Conference on Signals, Systems and Computers, 2013, 2013
532013
Faithful representation of stimuli with a population of integrate-and-fire neurons
AA Lazar, EA Pnevmatikakis
Neural computation 20 (11), 2715-2744, 2008
522008
Primacy of flexor locomotor pattern revealed by ancestral reversion of motor neuron identity
TA Machado, E Pnevmatikakis, L Paninski, TM Jessell, A Miri
Cell 162 (2), 338-350, 2015
492015
Sparse nonnegative deconvolution for compressive calcium imaging: algorithms and phase transitions
EA Pnevmatikakis, L Paninski
Advances in Neural Information Processing Systems, 2013, 2013
452013
An inpainting system for automatic image structure-texture restoration with text removal
EA Pnevmatikakis, P Maragos
2008 15th IEEE International Conference on Image Processing, 2616-2619, 2008
402008
Encoding natural scenes with neural circuits with random thresholds
AA Lazar, EA Pnevmatikakis, Y Zhou
Vision research 50 (22), 2200-2212, 2010
382010
A structured matrix factorization framework for large scale calcium imaging data analysis
EA Pnevmatikakis, Y Gao, D Soudry, D Pfau, C Lacefield, K Poskanzer, ...
arXiv preprint arXiv:1409.2903, 2014
342014
Onacid: Online analysis of calcium imaging data in real time
A Giovannucci, J Friedrich, M Kaufman, A Churchland, D Chklovskii, ...
Biorxiv, 193383, 2017
332017
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Articles 1–20