| Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes T Raj, K Rothamel, S Mostafavi, C Ye, MN Lee, JM Replogle, T Feng, ... Science 344 (6183), 519-523, 2014 | 534 | 2014 |
| Conservation and divergence in the transcriptional programs of the human and mouse immune systems T Shay, V Jojic, O Zuk, K Rothamel, D Puyraimond-Zemmour, T Feng, ... Proceedings of the National Academy of Sciences 110 (8), 2946-2951, 2013 | 349 | 2013 |
| The transcriptional landscape of αβ T cell differentiation M Mingueneau, T Kreslavsky, D Gray, T Heng, R Cruse, J Ericson, ... Nature immunology 14 (6), 619-632, 2013 | 292 | 2013 |
| Parsing the interferon transcriptional network and its disease associations S Mostafavi, H Yoshida, D Moodley, H LeBoité, K Rothamel, T Raj, CJ Ye, ... Cell 164 (3), 564-578, 2016 | 275 | 2016 |
| Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice J Vincent, C Adura, P Gao, A Luz, L Lama, Y Asano, R Okamoto, ... Nature communications 8 (1), 750, 2017 | 249 | 2017 |
| Identification of transcriptional regulators in the mouse immune system V Jojic, T Shay, K Sylvia, O Zuk, X Sun, J Kang, A Regev, D Koller Nature immunology 14 (6), 633-643, 2013 | 202 | 2013 |
| CD33: increased inclusion of exon 2 implicates the Ig V-set domain in Alzheimer's disease susceptibility T Raj, KJ Ryan, JM Replogle, LB Chibnik, L Rosenkrantz, A Tang, ... Human molecular genetics 23 (10), 2729-2736, 2014 | 155 | 2014 |
| Gene expression during the generation and activation of mouse neutrophils: implication of novel functional and regulatory pathways JA Ericson, P Duffau, K Yasuda, A Ortiz-Lopez, K Rothamel, IR Rifkin, ... PloS one 9 (10), e108553, 2014 | 110 | 2014 |
| Differential splicing across immune system lineages A Ergun, G Doran, JC Costello, HH Paik, JJ Collins, D Mathis, C Benoist, ... Proceedings of the National Academy of Sciences 110 (35), 14324-14329, 2013 | 94 | 2013 |
| Discovery of widespread host protein interactions with the pre-replicated genome of CHIKV using VIR-CLASP B Kim, S Arcos, K Rothamel, J Jian, KL Rose, WH McDonald, Y Bian, ... Molecular cell 78 (4), 624-640. e7, 2020 | 75 | 2020 |
| A common polymorphism near PER1 and the timing of human behavioral rhythms ASP Lim, AM Chang, JM Shulman, T Raj, LB Chibnik, SW Cain, ... Annals of neurology 72 (3), 324-334, 2012 | 63 | 2012 |
| Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains S Mostafavi, A Ortiz-Lopez, MA Bogue, K Hattori, C Pop, D Koller, ... The Journal of Immunology 193 (9), 4485-4496, 2014 | 54 | 2014 |
| ELAVL1 primarily couples mRNA stability with the 3′ UTRs of interferon-stimulated genes K Rothamel, S Arcos, B Kim, C Reasoner, S Lisy, N Mukherjee, M Ascano Cell reports 35 (8), 2021 | 45 | 2021 |
| Proteomic discovery of chemical probes that perturb protein complexes in human cells MR Lazear, JR Remsberg, MG Jaeger, K Rothamel, H Her, KE DeMeester, ... Molecular Cell 83 (10), 1725-1742. e12, 2023 | 35 | 2023 |
| ImmGen at 15 SV Aguilar, O Aguilar, R Allan, V Angeli, MN Artyomov, N Asinovski, ... Nature immunology 21 (7), 700-703, 2020 | 25 | 2020 |
| Viral crosslinking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes B Kim, S Arcos, K Rothamel, M Ascano Nature protocols 16 (1), 516-531, 2021 | 16 | 2021 |
| Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice. Nat Commun 8: 750 J Vincent, C Adura, P Gao, A Luz, L Lama, Y Asano, R Okamoto, ... | 16 | 2017 |
| RNA binding proteins as pioneer determinants of infection: protective, proviral, or both? S Lisy, K Rothamel, M Ascano Viruses 13 (11), 2172, 2021 | 12 | 2021 |
| Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP DA Lorenz, HL Her, KA Shen, K Rothamel, KR Hutt, AC Nojadera, ... Nature methods 20 (1), 65-69, 2023 | 9 | 2023 |
| HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence W Jin, KW Brannan, K Kapeli, SS Park, HQ Tan, ML Gosztyla, ... Molecular Cell 83 (14), 2595-2611. e11, 2023 | 5 | 2023 |
