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James Cuff
James Cuff
Office of Research Computing and Data @ MIT
在 mit.edu 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
Initial sequencing and comparative analysis of the mouse genome
European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ...
Nature 420 (6915), 520-562, 2002
86562002
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, ...
Cell 125 (2), 315-326, 2006
62752006
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
59952007
Genome sequence, comparative analysis and haplotype structure of the domestic dog
K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson, DB Jaffe, ...
Nature 438 (7069), 803-819, 2005
31692005
The Ensembl genome database project
T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ...
Nucleic acids research 30 (1), 38-41, 2002
19872002
The jalview java alignment editor
M Clamp, J Cuff, SM Searle, GJ Barton
Bioinformatics 20 (3), 426-427, 2004
18552004
JPred: a consensus secondary structure prediction server.
JA Cuff, ME Clamp, AS Siddiqui, M Finlay, GJ Barton
Bioinformatics (Oxford, England) 14 (10), 892-893, 1998
13011998
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
12672011
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
JA Cuff, GJ Barton
Proteins: Structure, Function, and Bioinformatics 40 (3), 502-511, 2000
10482000
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
JA Cuff, GJ Barton
Proteins: Structure, Function, and Bioinformatics 34 (4), 508-519, 1999
8881999
Distinguishing protein-coding and noncoding genes in the human genome
M Clamp, B Fry, M Kamal, X Xie, J Cuff, MF Lin, M Kellis, K Lindblad-Toh, ...
Proceedings of the National Academy of Sciences 104 (49), 19428-19433, 2007
8242007
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447 (7141), 167-177, 2007
7872007
An overview of Ensembl
E Birney, TD Andrews, P Bevan, M Caccamo, Y Chen, L Clarke, G Coates, ...
Genome research 14 (5), 925-928, 2004
5702004
Ensembl 2002: accommodating comparative genomics
M Clamp, D Andrews, D Barker, P Bevan, G Cameron, Y Chen, L Clark, ...
Nucleic Acids Research 31 (1), 38-42, 2003
2922003
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2522007
Ensembl 2004
E Birney, D Andrews, P Bevan, M Caccamo, G Cameron, Y Chen, ...
Nucleic acids research 32 (suppl_1), D468-D470, 2004
2342004
Initial sequencing and comparative analysis of the mouse genome
C Asif T, C Lisa L, D Kimberly D, F Ginger A, F Lucinda A, F Robert S, ...
Nature 420 (6915), 2002
2122002
Broad Institute Sequencing Platform and Whole Genome Assembly Team. Baylor College of Medicine Human Genome Sequencing Center Sequencing Team. Genome Institute at Washington …
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
832011
Broad Institute Genome Sequencing Platform. Broad Institute Whole Genome Assembly Team Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ...
Nature 447, 167-177, 2007
75*2007
The Ensembl computing architecture
JA Cuff, GMP Coates, TJR Cutts, M Rae
Genome research 14 (5), 971-975, 2004
412004
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